Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003454A_C01 KMC003454A_c01
(592 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_191498.1| putative protein; protein id: At3g59390.1 [Arab... 205 5e-54
ref|XP_132289.1| RIKEN cDNA 2410131K14 [Mus musculus] gi|2635565... 84 2e-15
ref|NP_788909.1| CG15643-PA [Drosophila melanogaster] gi|7293087... 80 1e-14
ref|NP_079014.1| hypothetical protein FLJ21415 [Homo sapiens] gi... 80 3e-14
ref|XP_222208.1| similar to RIKEN cDNA 2410131K14 [Mus musculus]... 72 7e-12
>ref|NP_191498.1| putative protein; protein id: At3g59390.1 [Arabidopsis thaliana]
gi|11288814|pir||T49007 hypothetical protein F25L23.250
- Arabidopsis thaliana gi|7801689|emb|CAB91609.1|
putative protein [Arabidopsis thaliana]
Length = 273
Score = 205 bits (521), Expect(2) = 5e-54
Identities = 88/130 (67%), Positives = 110/130 (83%)
Frame = +1
Query: 202 VQGRYHLTDDNGFVCSALSVDSMSRCCPQSREKFSCHGCNVLSQCCNSYEYCVSCCLNPA 381
VQGRY ++DD G VC ALS++S +RCCP E+FSCHGCN+LSQCCNSYE+CVSCCLNP+
Sbjct: 44 VQGRYLISDDEGNVCDALSLESRTRCCPWKGERFSCHGCNILSQCCNSYEFCVSCCLNPS 103
Query: 382 LTSKEQVLKMKISKPVTARTYENVFDYCAARCRHSSESVVHENAYLSDFHHCFSLPSNSS 561
T E+V+K+K++KP T+ TY++VFD+CA RCRH+SESVVHENAY S+FHHCFSL SN+S
Sbjct: 104 QTLLEKVVKVKVAKPATSGTYKSVFDFCAGRCRHNSESVVHENAYHSEFHHCFSLTSNAS 163
Query: 562 GTNVTLTEAR 591
G N+T E R
Sbjct: 164 GANLTQVETR 173
Score = 28.1 bits (61), Expect(2) = 5e-54
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +3
Query: 105 LLLLFLFHFSSPITAIRKDIGFQSIIPTCKTT 200
LLL+ F F ++AIRKDIGF +C+TT
Sbjct: 13 LLLIMGFLFPLRVSAIRKDIGFLE-ERSCRTT 43
>ref|XP_132289.1| RIKEN cDNA 2410131K14 [Mus musculus] gi|26355654|dbj|BAC41192.1|
unnamed protein product [Mus musculus]
Length = 205
Score = 83.6 bits (205), Expect = 2e-15
Identities = 47/125 (37%), Positives = 73/125 (57%), Gaps = 8/125 (6%)
Frame = +1
Query: 166 DSNPSSPPAKPPVQGRYHLTDDNGFVCSALSVDSMSRCCP---QSREKFSCHGCNVLSQC 336
+S+ S + VQG++ LTD+ G+VC + + + CC S +++ C GC + + C
Sbjct: 67 NSSRPSNQCRNSVQGKHLLTDELGYVCERKDLLA-NGCCDVSVPSTKQYCCDGC-LANGC 124
Query: 337 CNSYEYCVSCCLNPALTSKEQVLKMKISKPVTA-----RTYENVFDYCAARCRHSSESVV 501
C +YEYCVSCCL P SK+ +L+ +++ A E+ F+ C A+CR SS+SV
Sbjct: 125 CEAYEYCVSCCLQP---SKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQ 181
Query: 502 HENAY 516
HEN Y
Sbjct: 182 HENTY 186
>ref|NP_788909.1| CG15643-PA [Drosophila melanogaster] gi|7293087|gb|AAF48472.1|
CG15643-PA [Drosophila melanogaster]
gi|17944302|gb|AAL48044.1| RE11751p [Drosophila
melanogaster]
Length = 212
Score = 80.5 bits (197), Expect = 1e-14
Identities = 46/123 (37%), Positives = 64/123 (51%), Gaps = 8/123 (6%)
Frame = +1
Query: 202 VQGRYHLTDDNGFVCSALSVDSMSRCCPQSREK---FSCHGCNVLSQCCNSYEYCVSCCL 372
VQGR L D+ GFVC V + + CC +SC CN + CC YEYCVSCCL
Sbjct: 81 VQGRQWLADERGFVCRREEVLT-NGCCNLELPGIGYYSCRTCNTSTHCCGVYEYCVSCCL 139
Query: 373 NPALTSKEQVLKMKISKPVTAR----TYENVFDYCAARCRHSSESVVHENAYLSD-FHHC 537
+P ++ +L+ + P T + + + F+ C +CR +S SV HEN Y HC
Sbjct: 140 HP---GQQPLLERVLQAPNTPKYIFASVTDHFELCLVKCRTNSHSVEHENKYRDPAAKHC 196
Query: 538 FSL 546
+ L
Sbjct: 197 YGL 199
>ref|NP_079014.1| hypothetical protein FLJ21415 [Homo sapiens]
gi|10437508|dbj|BAB15058.1| unnamed protein product
[Homo sapiens] gi|18044293|gb|AAH19843.1|AAH19843
hypothetical protein FLJ21415 [Homo sapiens]
Length = 205
Score = 79.7 bits (195), Expect = 3e-14
Identities = 44/125 (35%), Positives = 73/125 (58%), Gaps = 8/125 (6%)
Frame = +1
Query: 166 DSNPSSPPAKPPVQGRYHLTDDNGFVCSALSVDSMSRCCP---QSREKFSCHGCNVLSQC 336
+S+ S + +QG++ +TD+ G+VC + ++ CC S +++ C GC + C
Sbjct: 67 NSSRPSNQCRNSIQGKHLITDELGYVCERKDL-LVNGCCNVNVPSTKQYCCDGCWP-NGC 124
Query: 337 CNSYEYCVSCCLNPALTSKEQVLKMKISKPVTA-----RTYENVFDYCAARCRHSSESVV 501
C++YEYCVSCCL P +K+ +L+ +++ A E+ F+ C A+CR SS+SV
Sbjct: 125 CSAYEYCVSCCLQP---NKQLLLERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQ 181
Query: 502 HENAY 516
HEN Y
Sbjct: 182 HENTY 186
>ref|XP_222208.1| similar to RIKEN cDNA 2410131K14 [Mus musculus] [Rattus norvegicus]
Length = 972
Score = 71.6 bits (174), Expect = 7e-12
Identities = 39/102 (38%), Positives = 60/102 (58%), Gaps = 8/102 (7%)
Frame = +1
Query: 235 GFVCSALSVDSMSRCCP---QSREKFSCHGCNVLSQCCNSYEYCVSCCLNPALTSKEQVL 405
G+VC + + + CC S +++ C+GC + + CC +YEYCVSCCL P SK+ +L
Sbjct: 549 GYVCERKDLLA-NGCCDVSVPSTKQYCCNGC-LANGCCEAYEYCVSCCLQP---SKQLLL 603
Query: 406 KMKISKPVTA-----RTYENVFDYCAARCRHSSESVVHENAY 516
+ +++ A E+ F+ C A+CR SS+SV HEN Y
Sbjct: 604 ERFLNRAAVAFQNLFMAVEDHFELCLAKCRTSSQSVQHENTY 645
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 515,048,242
Number of Sequences: 1393205
Number of extensions: 11146291
Number of successful extensions: 40532
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 38155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 40411
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 22569056698
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
