Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003453A_C01 KMC003453A_c01
(545 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
sp|P35493|PMGI_RICCO 2,3-bisphosphoglycerate-independent phospho... 194 4e-49
sp|Q42908|PMGI_MESCR 2,3-bisphosphoglycerate-independent phospho... 192 2e-48
sp|O24246|PMGI_PRUDU 2,3-bisphosphoglycerate-independent phospho... 189 2e-47
emb|CAB66002.1| cofactor-independent phosphoglyceromutase [Apium... 187 5e-47
gb|AAD24857.1|AF047842_1 phosphoglycerate mutase [Solanum tubero... 186 1e-46
>sp|P35493|PMGI_RICCO 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
(Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I)
gi|1076562|pir||S49647 phosphoglycerate mutase (EC
5.4.2.1), 2, 3-bisphosphoglycerate-independent - castor
bean gi|474170|emb|CAA49995.1| phosphoglycerate mutase
[Ricinus communis]
Length = 556
Score = 194 bits (494), Expect = 4e-49
Identities = 94/107 (87%), Positives = 101/107 (93%)
Frame = -3
Query: 543 VKMILDAIEQVGGIYVVTADHGNAEDMVKRDKSGNPQLDKNGKIQILTSHTLEPVPLAIG 364
VKMI+DAIEQVGGIYVVTADHGNAEDMVKRDKSG P DK+GKIQILTSHTL+PVP+AIG
Sbjct: 449 VKMIIDAIEQVGGIYVVTADHGNAEDMVKRDKSGKPMADKSGKIQILTSHTLQPVPIAIG 508
Query: 363 GPGLSAGVRFRSDVPTGGLANVAATVINLHGFEAPSDYETTLIEVVD 223
GPGL+ GVRFRSD+PTGGLANVAATV+NLHGFEAPSDYE TLIE VD
Sbjct: 509 GPGLTPGVRFRSDIPTGGLANVAATVMNLHGFEAPSDYEPTLIEAVD 555
>sp|Q42908|PMGI_MESCR 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
(Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I)
gi|2118335|pir||S60473 phosphoglycerate mutase (EC
5.4.2.1), 2, 3-bisphosphoglycerate-independent - common
ice plant gi|602426|gb|AAA86979.1| phosphoglyceromutase
Length = 559
Score = 192 bits (489), Expect = 2e-48
Identities = 92/106 (86%), Positives = 100/106 (93%)
Frame = -3
Query: 543 VKMILDAIEQVGGIYVVTADHGNAEDMVKRDKSGNPQLDKNGKIQILTSHTLEPVPLAIG 364
VKMI+DAIEQVGGIYV+TADHGNAEDMVKRDK G P +DKNG IQILTSHTLEPVP+AIG
Sbjct: 452 VKMIIDAIEQVGGIYVITADHGNAEDMVKRDKKGQPAMDKNGNIQILTSHTLEPVPIAIG 511
Query: 363 GPGLSAGVRFRSDVPTGGLANVAATVINLHGFEAPSDYETTLIEVV 226
GPGL+ GVRFR+D+PTGGLANVAATV+NLHGFEAPSDYE TLIEVV
Sbjct: 512 GPGLTPGVRFRNDIPTGGLANVAATVMNLHGFEAPSDYEPTLIEVV 557
>sp|O24246|PMGI_PRUDU 2,3-bisphosphoglycerate-independent phosphoglycerate mutase
(Phosphoglyceromutase) (BPG-independent PGAM) (PGAM-I)
gi|7437413|pir||T09138 phosphoglycerate mutase (EC
5.4.2.1), 2, 3-bisphosphoglycerate-independent - almond
(fragment) gi|1498232|emb|CAA52928.1| phosphoglycerate
mutase [Prunus dulcis] gi|1585833|prf||2202194A
2,3-bisphosphoglycerate-independent phosphoglycerate
mutase
Length = 488
Score = 189 bits (479), Expect = 2e-47
Identities = 91/107 (85%), Positives = 100/107 (93%)
Frame = -3
Query: 543 VKMILDAIEQVGGIYVVTADHGNAEDMVKRDKSGNPQLDKNGKIQILTSHTLEPVPLAIG 364
VK+I+DAIEQVGGIYVVTADHGNAEDMVKR+K G P LDKNG IQILTSHTL+PVP+AIG
Sbjct: 381 VKIIIDAIEQVGGIYVVTADHGNAEDMVKRNKKGQPLLDKNGNIQILTSHTLQPVPIAIG 440
Query: 363 GPGLSAGVRFRSDVPTGGLANVAATVINLHGFEAPSDYETTLIEVVD 223
GPGL+ GV+FR DVP GGLANVAATV+NLHGFEAP+DYETTLIEVVD
Sbjct: 441 GPGLAPGVQFRKDVPNGGLANVAATVMNLHGFEAPADYETTLIEVVD 487
>emb|CAB66002.1| cofactor-independent phosphoglyceromutase [Apium graveolens]
Length = 559
Score = 187 bits (476), Expect = 5e-47
Identities = 92/107 (85%), Positives = 98/107 (90%)
Frame = -3
Query: 543 VKMILDAIEQVGGIYVVTADHGNAEDMVKRDKSGNPQLDKNGKIQILTSHTLEPVPLAIG 364
VKMILD IEQVGGIYVVTADHGNAEDMVKR+K G P LDK+GKIQILTSHTLEPVP+AIG
Sbjct: 452 VKMILDTIEQVGGIYVVTADHGNAEDMVKRNKKGEPALDKDGKIQILTSHTLEPVPIAIG 511
Query: 363 GPGLSAGVRFRSDVPTGGLANVAATVINLHGFEAPSDYETTLIEVVD 223
GPGL GVR+R DVP+GGLANVAATV+NLHGF AP DYETTLIEVVD
Sbjct: 512 GPGLLPGVRYRKDVPSGGLANVAATVMNLHGFVAPDDYETTLIEVVD 558
>gb|AAD24857.1|AF047842_1 phosphoglycerate mutase [Solanum tuberosum]
Length = 559
Score = 186 bits (473), Expect = 1e-46
Identities = 91/107 (85%), Positives = 99/107 (92%)
Frame = -3
Query: 543 VKMILDAIEQVGGIYVVTADHGNAEDMVKRDKSGNPQLDKNGKIQILTSHTLEPVPLAIG 364
VKMIL+AIEQVGGI++VTADHGNAEDMVKR+K G P LDKNG IQILTSHTLEPVP+AIG
Sbjct: 452 VKMILEAIEQVGGIFLVTADHGNAEDMVKRNKKGEPLLDKNGNIQILTSHTLEPVPIAIG 511
Query: 363 GPGLSAGVRFRSDVPTGGLANVAATVINLHGFEAPSDYETTLIEVVD 223
GPGL GVRFR+D+PTGGLANVAAT +NLHGFEAPSDYE TLIEVVD
Sbjct: 512 GPGLLPGVRFRTDLPTGGLANVAATFMNLHGFEAPSDYEPTLIEVVD 558
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,539,230
Number of Sequences: 1393205
Number of extensions: 10446542
Number of successful extensions: 28105
Number of sequences better than 10.0: 121
Number of HSP's better than 10.0 without gapping: 27021
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28059
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 18660035355
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
