Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003452A_C01 KMC003452A_c01
(479 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_234860.1| similar to zinc finger protein BC027407 [Mus mu... 34 0.94
ref|XP_234863.1| similar to hypothetical protein FLJ38281 [Homo ... 34 0.94
dbj|BAB55507.1| peptidase-like protein [Oryza sativa (japonica c... 33 1.2
gb|AAH43067.1| Similar to zinc finger protein BC027407 [Mus musc... 32 3.6
ref|NP_070484.1| hypothetical protein [Archaeoglobus fulgidus] g... 31 6.1
>ref|XP_234860.1| similar to zinc finger protein BC027407 [Mus musculus] [Rattus
norvegicus]
Length = 659
Score = 33.9 bits (76), Expect = 0.94
Identities = 19/43 (44%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = +1
Query: 10 FSYQEYRLEH-RVHDNEQPFTNKYG*QGAKAPTSSLTYHKHEK 135
F+ Y +H R+H E+P+T KY KA T S Y+KHEK
Sbjct: 611 FTLPSYLRKHARIHTGEKPYTCKY---CGKAFTHSSAYYKHEK 650
>ref|XP_234863.1| similar to hypothetical protein FLJ38281 [Homo sapiens] [Rattus
norvegicus]
Length = 707
Score = 33.9 bits (76), Expect = 0.94
Identities = 19/43 (44%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = +1
Query: 10 FSYQEYRLEH-RVHDNEQPFTNKYG*QGAKAPTSSLTYHKHEK 135
F+ Y +H R+H E+P+T KY KA T S Y+KHEK
Sbjct: 602 FTLPSYLRKHARIHTGEKPYTCKY---CGKAFTHSSAYYKHEK 641
>dbj|BAB55507.1| peptidase-like protein [Oryza sativa (japonica cultivar-group)]
Length = 621
Score = 33.5 bits (75), Expect = 1.2
Identities = 17/49 (34%), Positives = 28/49 (56%), Gaps = 4/49 (8%)
Frame = -3
Query: 462 NHSCTLHLR----EPSKAATSSSSC*SSFLCDCFCVLSMPLHRFDHSMM 328
N + LHLR P A T ++S ++++CD F LS+P H +S++
Sbjct: 67 NDTAALHLRALTLHPHVAGTRANSLTAAYVCDAFSSLSIPAHITPYSVL 115
>gb|AAH43067.1| Similar to zinc finger protein BC027407 [Mus musculus]
Length = 545
Score = 32.0 bits (71), Expect = 3.6
Identities = 18/43 (41%), Positives = 24/43 (54%), Gaps = 1/43 (2%)
Frame = +1
Query: 10 FSYQEYRLEH-RVHDNEQPFTNKYG*QGAKAPTSSLTYHKHEK 135
F+ Y +H R+H E+P+T KY KA T +HKHEK
Sbjct: 495 FTLSSYLQKHKRIHTGEKPYTCKY---CGKAFTHPGAHHKHEK 534
>ref|NP_070484.1| hypothetical protein [Archaeoglobus fulgidus]
gi|14424336|sp|O28617|YG56_ARCFU Hypothetical protein
AF1656 precursor gi|7483685|pir||G69456 hypothetical
protein AF1656 - Archaeoglobus fulgidus
gi|2648922|gb|AAB89614.1| A. fulgidus predicted coding
region AF1656 [Archaeoglobus fulgidus DSM 4304]
Length = 144
Score = 31.2 bits (69), Expect = 6.1
Identities = 15/51 (29%), Positives = 27/51 (52%)
Frame = +2
Query: 134 NKEHTYIIVFLIVGSLGVSNYSCYAKDFKRISST*RLSSATPSIHAVPETN 286
N+E++Y ++F IV + G+ S DF + S ++ +H P+TN
Sbjct: 65 NEEYSYDVIFRIVDAPGIPKLSWDGDDFVQFSLRKNVNDWEVGMHLSPQTN 115
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 400,840,323
Number of Sequences: 1393205
Number of extensions: 8087369
Number of successful extensions: 18510
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 17828
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18499
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
