Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003451A_C01 KMC003451A_c01
(497 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_563994.1| expressed protein; protein id: At1g16240.1, sup... 86 2e-16
pir||C96827 protein F20B17.2 [imported] - Arabidopsis thaliana g... 81 7e-15
ref|NP_565213.1| expressed protein; protein id: At1g79590.1, sup... 81 7e-15
gb|AAM64357.1| unknown [Arabidopsis thaliana] 81 7e-15
gb|AAM52319.1|AC105363_8 Hypothetical protein [Oryza sativa (jap... 51 8e-06
>ref|NP_563994.1| expressed protein; protein id: At1g16240.1, supported by cDNA:
145295., supported by cDNA: gi_13811643, supported by
cDNA: gi_18650629, supported by cDNA: gi_20453318
[Arabidopsis thaliana] gi|28380164|sp|Q9SA23|SY51_ARATH
Syntaxin 51 (AtSYP51) gi|25372946|pir||C86297
hypothetical protein F3O9.4 - Arabidopsis thaliana
gi|4966344|gb|AAD34675.1|AC006341_3 ESTs gb|F15498,
gb|H37515, gb|T41906, gb|T22448, gb|W43356 and gb|T20739
come from this gene. [Arabidopsis thaliana]
gi|13811644|gb|AAK40223.1|AF355755_1 syntaxin of plants
51 [Arabidopsis thaliana] gi|18650630|gb|AAL75885.1|
At1g16240/F3O9_4 [Arabidopsis thaliana]
gi|20453319|gb|AAM19898.1| At1g16240/F3O9_4 [Arabidopsis
thaliana] gi|21553458|gb|AAM62551.1| unknown
[Arabidopsis thaliana]
Length = 232
Score = 85.9 bits (211), Expect = 2e-16
Identities = 42/57 (73%), Positives = 48/57 (83%)
Frame = -3
Query: 495 DLDQHVDVTDSRLRRVQKNLAVLNKRTNGGCSCLCMLLSVIGIVVLVVVIGLLVKYL 325
DLD HVDVTDSRLRRVQK+LAV+NK GCSC+ MLLSV+GIV L VVI +LVKY+
Sbjct: 176 DLDYHVDVTDSRLRRVQKSLAVMNKNMRSGCSCMSMLLSVLGIVGLAVVIWMLVKYM 232
>pir||C96827 protein F20B17.2 [imported] - Arabidopsis thaliana
gi|7715588|gb|AAF68106.1|AC010793_1 F20B17.2
[Arabidopsis thaliana]
Length = 260
Score = 80.9 bits (198), Expect = 7e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Frame = -3
Query: 495 DLDQHVDVTDSRLRRVQKNLAVLNKRTNGGCSCLCMLLSVIGIVVLVVVIGLLVKYL 325
DLD VD+TDSRLRRVQK+LA++NK GCSC+ MLLSV+GIV L +VI LLVKYL
Sbjct: 204 DLDYDVDITDSRLRRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVKYL 260
>ref|NP_565213.1| expressed protein; protein id: At1g79590.1, supported by cDNA:
23407., supported by cDNA: gi_13811645 [Arabidopsis
thaliana] gi|28380159|sp|Q94KK7|SY52_ARATH Syntaxin 52
(AtSYP52) gi|13811646|gb|AAK40224.1|AF355756_1 syntaxin
of plants 52 [Arabidopsis thaliana]
gi|28393106|gb|AAO41986.1| unknown protein [Arabidopsis
thaliana]
Length = 233
Score = 80.9 bits (198), Expect = 7e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Frame = -3
Query: 495 DLDQHVDVTDSRLRRVQKNLAVLNKRTNGGCSCLCMLLSVIGIVVLVVVIGLLVKYL 325
DLD VD+TDSRLRRVQK+LA++NK GCSC+ MLLSV+GIV L +VI LLVKYL
Sbjct: 177 DLDYDVDITDSRLRRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVKYL 233
>gb|AAM64357.1| unknown [Arabidopsis thaliana]
Length = 233
Score = 80.9 bits (198), Expect = 7e-15
Identities = 40/57 (70%), Positives = 47/57 (82%)
Frame = -3
Query: 495 DLDQHVDVTDSRLRRVQKNLAVLNKRTNGGCSCLCMLLSVIGIVVLVVVIGLLVKYL 325
DLD VD+TDSRLRRVQK+LA++NK GCSC+ MLLSV+GIV L +VI LLVKYL
Sbjct: 177 DLDYDVDITDSRLRRVQKSLALMNKSMKSGCSCMSMLLSVLGIVGLALVIWLLVKYL 233
>gb|AAM52319.1|AC105363_8 Hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 324
Score = 50.8 bits (120), Expect = 8e-06
Identities = 23/56 (41%), Positives = 35/56 (62%)
Frame = -3
Query: 495 DLDQHVDVTDSRLRRVQKNLAVLNKRTNGGCSCLCMLLSVIGIVVLVVVIGLLVKY 328
DLD+ + T ++L+R QK L + R SC C+LLSVI +V+LV ++ L+ Y
Sbjct: 269 DLDEKTEETSNQLQRAQKKLKSVTTRMRKSASCSCLLLSVIAVVILVALLWALIMY 324
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 429,922,968
Number of Sequences: 1393205
Number of extensions: 9015354
Number of successful extensions: 22911
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 21824
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22846
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
