Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003446A_C01 KMC003446A_c01
(609 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193500.1| putative protein; protein id: At4g17650.1, supp... 130 2e-29
gb|AAM65497.1| unknown [Arabidopsis thaliana] 130 2e-29
gb|AAK44160.2|AF370345_1 unknown protein [Arabidopsis thaliana] 130 2e-29
dbj|BAB89850.1| P0695H10.10 [Oryza sativa (japonica cultivar-gro... 90 2e-17
ref|XP_217393.1| similar to hypothetical protein FLJ13448 [Homo ... 74 2e-12
>ref|NP_193500.1| putative protein; protein id: At4g17650.1, supported by cDNA:
39872. [Arabidopsis thaliana]
Length = 256
Score = 130 bits (326), Expect = 2e-29
Identities = 56/86 (65%), Positives = 72/86 (83%)
Frame = -3
Query: 511 VQTTVSQSTLFDHLINVWEFNPGPVPGTCSLYFLVDFKFQSPLYSQIASMFFKEVASRMV 332
++TT + LFDHLIN+W+F PGP+PGTC L+F VDFKF SPLY Q+ASMFFKEVASR+V
Sbjct: 171 IKTTARDTGLFDHLINLWQFKPGPIPGTCDLHFHVDFKFNSPLYRQVASMFFKEVASRLV 230
Query: 331 GSFTERCRVIYGPEVRVLEKSYGENA 254
G+F++RCR++YGP VRV E +Y + A
Sbjct: 231 GAFSDRCRLVYGPGVRVDENAYEQRA 256
>gb|AAM65497.1| unknown [Arabidopsis thaliana]
Length = 256
Score = 130 bits (326), Expect = 2e-29
Identities = 56/86 (65%), Positives = 72/86 (83%)
Frame = -3
Query: 511 VQTTVSQSTLFDHLINVWEFNPGPVPGTCSLYFLVDFKFQSPLYSQIASMFFKEVASRMV 332
++TT + LFDHLIN+W+F PGP+PGTC L+F VDFKF SPLY Q+ASMFFKEVASR+V
Sbjct: 171 IKTTARDTGLFDHLINLWQFKPGPIPGTCDLHFHVDFKFNSPLYRQVASMFFKEVASRLV 230
Query: 331 GSFTERCRVIYGPEVRVLEKSYGENA 254
G+F++RCR++YGP VRV E +Y + A
Sbjct: 231 GAFSDRCRLVYGPGVRVDENAYEQRA 256
>gb|AAK44160.2|AF370345_1 unknown protein [Arabidopsis thaliana]
Length = 224
Score = 130 bits (326), Expect = 2e-29
Identities = 56/86 (65%), Positives = 72/86 (83%)
Frame = -3
Query: 511 VQTTVSQSTLFDHLINVWEFNPGPVPGTCSLYFLVDFKFQSPLYSQIASMFFKEVASRMV 332
++TT + LFDHLIN+W+F PGP+PGTC L+F VDFKF SPLY Q+ASMFFKEVASR+V
Sbjct: 139 IKTTARDTGLFDHLINLWQFKPGPIPGTCDLHFHVDFKFNSPLYRQVASMFFKEVASRLV 198
Query: 331 GSFTERCRVIYGPEVRVLEKSYGENA 254
G+F++RCR++YGP VRV E +Y + A
Sbjct: 199 GAFSDRCRLVYGPGVRVDENAYEQRA 224
>dbj|BAB89850.1| P0695H10.10 [Oryza sativa (japonica cultivar-group)]
Length = 161
Score = 90.1 bits (222), Expect = 2e-17
Identities = 39/49 (79%), Positives = 43/49 (87%)
Frame = -3
Query: 511 VQTTVSQSTLFDHLINVWEFNPGPVPGTCSLYFLVDFKFQSPLYSQIAS 365
++TT S+S LFDHLINVWEF PGPVPGTC LYFLVDFKFQSPLY Q+ S
Sbjct: 93 IKTTASESGLFDHLINVWEFKPGPVPGTCDLYFLVDFKFQSPLYRQVKS 141
>ref|XP_217393.1| similar to hypothetical protein FLJ13448 [Homo sapiens] [Rattus
norvegicus]
Length = 195
Score = 73.6 bits (179), Expect = 2e-12
Identities = 35/88 (39%), Positives = 55/88 (61%), Gaps = 2/88 (2%)
Frame = -3
Query: 538 LIALIVFLCVQTTVSQSTLFDHLINVWEFNPG--PVPGTCSLYFLVDFKFQSPLYSQIAS 365
++ L+ V+ + + LF+HL VW F+PG P TC+L F + F+F+S L+SQ+A+
Sbjct: 96 IVTLVKPHLVKASCTDGKLFNHLETVWRFSPGLPGYPRTCTLDFSISFEFRSLLHSQLAT 155
Query: 364 MFFKEVASRMVGSFTERCRVIYGPEVRV 281
+FF EV +MV +F R +YGPE +
Sbjct: 156 LFFDEVVKQMVAAFERRACKLYGPETNI 183
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,732,084
Number of Sequences: 1393205
Number of extensions: 10022354
Number of successful extensions: 19141
Number of sequences better than 10.0: 49
Number of HSP's better than 10.0 without gapping: 18578
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19122
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 24283162270
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
