Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003445A_C01 KMC003445A_c01
(674 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197466.1| putative protein; protein id: At5g19650.1 [Arab... 125 5e-28
gb|AAN17752.1| ovate protein [Lycopersicon esculentum] 102 6e-21
ref|NP_179440.1| hypothetical protein; protein id: At2g18500.1 [... 91 2e-17
gb|AAM88623.1| hypothetical protein [Oryza sativa (japonica cult... 86 5e-16
dbj|BAB92122.1| P0443E07.26 [Oryza sativa (japonica cultivar-gro... 86 5e-16
>ref|NP_197466.1| putative protein; protein id: At5g19650.1 [Arabidopsis thaliana]
Length = 221
Score = 125 bits (314), Expect = 5e-28
Identities = 75/169 (44%), Positives = 100/169 (58%), Gaps = 10/169 (5%)
Frame = -1
Query: 671 KEKNVRSKKKKKKKKHAQKKNRAREFFPFNSCAKDTDFGGYWWYSSDE----------DD 522
+ ++ R +KK K Q+ + F S K T G ++W S+E DD
Sbjct: 79 ESRSFRDLRKKVKTNRKQRSQFGSDPL-FASRFKST--GSWYWSCSEEEDEGDKEESEDD 135
Query: 521 ETDTLFSSRSLSSDSSRSRRRRRKNDRSSSDMGVLPLQGKVKDTFAVVKRSSDPHSDFRT 342
++DTLFSSRS SSDSS++ ++FAVVK+S DP+ DFRT
Sbjct: 136 DSDTLFSSRSFSSDSSKA------------------------ESFAVVKKSKDPYEDFRT 171
Query: 341 SMVEMIVEKQIFSPADLENLLQCFLSLNSNHHHQIIVEVFTEIWEALFS 195
SMVEMIVE+QIF+PA+L+ LLQCFLSLNS HH++IV+VF EI+ LFS
Sbjct: 172 SMVEMIVERQIFAPAELQQLLQCFLSLNSRQHHKVIVQVFLEIYATLFS 220
>gb|AAN17752.1| ovate protein [Lycopersicon esculentum]
Length = 352
Score = 102 bits (253), Expect = 6e-21
Identities = 71/210 (33%), Positives = 104/210 (48%), Gaps = 60/210 (28%)
Frame = -1
Query: 647 KKKKKKKHAQKKNRAREFFPFNSCAKDTDFGGYW------WYSSDEDDETDTLFSSRS-- 492
+KKKKK+ KK + + S + ++ G W +++E+ E+ + SSRS
Sbjct: 123 EKKKKKQQRVKKTKTKSRIIRMSTSSADEYSGILSGTNTDWDNNEEETES-LVSSSRSCY 181
Query: 491 -LSSDSSRS---------------RRRRRKNDR-----------------------SSSD 429
SSD S + RRR ++N S+S
Sbjct: 182 DFSSDDSSTDFNPHLETICETTTMRRRHKRNANTKRRSIKQSRPSFSSSKGRRSSVSTSS 241
Query: 428 MGVLP-------------LQGKVKDTFAVVKRSSDPHSDFRTSMVEMIVEKQIFSPADLE 288
LP + GKVK++FA+VK+S DP+ DF+ SM+EMI+EK++F +LE
Sbjct: 242 DSELPARLSVFKKLIPCSVDGKVKESFAIVKKSQDPYEDFKRSMMEMILEKEMFEKNELE 301
Query: 287 NLLQCFLSLNSNHHHQIIVEVFTEIWEALF 198
LLQCFLSLN H+H +IVE F++IWE LF
Sbjct: 302 QLLQCFLSLNGKHYHGVIVEAFSDIWETLF 331
>ref|NP_179440.1| hypothetical protein; protein id: At2g18500.1 [Arabidopsis
thaliana] gi|25411872|pir||A84565 hypothetical protein
At2g18500 [imported] - Arabidopsis thaliana
gi|4218008|gb|AAD12216.1| hypothetical protein
[Arabidopsis thaliana] gi|27754544|gb|AAO22719.1|
unknown protein [Arabidopsis thaliana]
gi|28394111|gb|AAO42463.1| unknown protein [Arabidopsis
thaliana]
Length = 315
Score = 90.5 bits (223), Expect = 2e-17
Identities = 63/177 (35%), Positives = 94/177 (52%), Gaps = 19/177 (10%)
Frame = -1
Query: 668 EKNVRSKKKKKKKKHAQKKNRAREFFPFNSCAKDTDFGGYWWYSSDEDDETDTLFSSRSL 489
EK+ R + KKK+K +++++ +S ++TD S++ E +SS L
Sbjct: 126 EKDNRRRLKKKEKSNSRRRGS------ISSAEEETDRESLLPSSTNLSPE----YSSSEL 175
Query: 488 SSDSSRSRRRRRK------NDRSSSDMGVLPLQGKVK-------------DTFAVVKRSS 366
+ R R+ +K ++ SS L V+ + AVVK+S
Sbjct: 176 PRVTRRPRQLLKKAVIEEESESSSPPPSPARLSSFVQRLMPCTMAAAVMVEGVAVVKKSE 235
Query: 365 DPHSDFRTSMVEMIVEKQIFSPADLENLLQCFLSLNSNHHHQIIVEVFTEIWEALFS 195
DP+ DF+ SM+EMIVEK++F A+LE LL CFLSLN+ HH+ IV F+EIW ALFS
Sbjct: 236 DPYEDFKGSMMEMIVEKKMFEVAELEQLLSCFLSLNAKRHHRAIVRAFSEIWVALFS 292
>gb|AAM88623.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 263
Score = 85.9 bits (211), Expect = 5e-16
Identities = 45/101 (44%), Positives = 60/101 (58%)
Frame = -1
Query: 497 RSLSSDSSRSRRRRRKNDRSSSDMGVLPLQGKVKDTFAVVKRSSDPHSDFRTSMVEMIVE 318
R +D RR R+ G G+V+++ AVVK S+DP DFR SM++MIVE
Sbjct: 127 RGAKNDGRGGGRRHRRTVSDGGGGG----SGRVEESVAVVKESADPLFDFRRSMLQMIVE 182
Query: 317 KQIFSPADLENLLQCFLSLNSNHHHQIIVEVFTEIWEALFS 195
K+I A+L LL FL LNS HHH +I+ F EIWE +F+
Sbjct: 183 KEIVGGAELRELLHRFLPLNSPHHHHVILRAFAEIWEEVFA 223
>dbj|BAB92122.1| P0443E07.26 [Oryza sativa (japonica cultivar-group)]
Length = 369
Score = 85.9 bits (211), Expect = 5e-16
Identities = 69/207 (33%), Positives = 99/207 (47%), Gaps = 68/207 (32%)
Frame = -1
Query: 617 KKNRAREFF--PFN-SCAKDTDFGGYWWYSSDEDD----------------ETDTLFSS- 498
K ++AR P+ + + D D G +SSD DD ET+ FSS
Sbjct: 160 KSDKARRLLSNPYGFTTSDDADTDGDDVFSSDADDRGGRVVAGGGGGAKKGETEAFFSSS 219
Query: 497 RSLSSDSSR-------------------------------------SRRRRRKNDRSSSD 429
RS SSDSS RR+R+ R+SS
Sbjct: 220 RSFSSDSSEFYTKKKKRNKPKKKSPSTASSKAAPPPPPPPPPTTRHQIRRKRRAARASSC 279
Query: 428 M-------GVLPL----QGKVKDTFAVVKRSSDPHSDFRTSMVEMIVEKQIFSPADLENL 282
+ G P+ + +V+ FAVVKRS DP++DFR+SMVEM+V +Q+F A+LE L
Sbjct: 280 VDTCGVRDGFRPVVSAAEEQVRRGFAVVKRSRDPYADFRSSMVEMVVGRQLFGAAELERL 339
Query: 281 LQCFLSLNSNHHHQIIVEVFTEIWEAL 201
L+ +LSLN+ HH +I++ F++IW L
Sbjct: 340 LRSYLSLNAPRHHPVILQAFSDIWVVL 366
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,041,807
Number of Sequences: 1393205
Number of extensions: 14723615
Number of successful extensions: 119730
Number of sequences better than 10.0: 218
Number of HSP's better than 10.0 without gapping: 73706
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108050
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29704274460
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
