Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003444A_C01 KMC003444A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAL66194.1|AF386512_1 cytochrome P450 [Pyrus communis] 149 1e-35
emb|CAB65335.1| ferulate-5-hydroxylase [Populus balsamifera subs... 109 2e-23
emb|CAC26932.1| ferulate-5-hydroxylase [Arabidopsis thaliana] gi... 107 9e-23
emb|CAC26936.1| ferulate-5-hydroxylase [Arabidopsis thaliana] gi... 107 9e-23
ref|NP_195345.1| ferulate-5-hydroxylase (FAH1); protein id: At4g... 107 9e-23
>gb|AAL66194.1|AF386512_1 cytochrome P450 [Pyrus communis]
Length = 506
Score = 149 bits (377), Expect = 1e-35
Identities = 67/99 (67%), Positives = 80/99 (80%)
Frame = -2
Query: 487 DPKVWSNNADIFYPERFLNCNVDLRGHDFQLIPFSSGRRGCPGINMGLVMVRLVVAQLVH 308
DPK W +NA+ FYPERF+N NVDLRGHDFQLIPF SGRRGCP + +GL VRL + L+H
Sbjct: 405 DPKSW-DNAEEFYPERFMNRNVDLRGHDFQLIPFGSGRRGCPAMQLGLTTVRLALGNLLH 463
Query: 307 CFNWELPLGISPNDLDMTERFGLAMPRSNHLLAMPTCRL 191
C NWELP G+ P DLDMTE+FGL++ ++ HLLA PTCRL
Sbjct: 464 CSNWELPSGMLPKDLDMTEKFGLSLSKAKHLLATPTCRL 502
>emb|CAB65335.1| ferulate-5-hydroxylase [Populus balsamifera subsp. trichocarpa]
Length = 513
Score = 109 bits (272), Expect = 2e-23
Identities = 53/104 (50%), Positives = 69/104 (65%), Gaps = 1/104 (0%)
Frame = -2
Query: 487 DPKVWSNNADIFYPERFLNCNV-DLRGHDFQLIPFSSGRRGCPGINMGLVMVRLVVAQLV 311
D W + D F P RFL V D +G+ F+ IPF SGRR CPG+ +GL + L VA L+
Sbjct: 411 DKNSWED-PDSFKPSRFLEPGVPDFKGNHFEFIPFGSGRRSCPGMQLGLYALDLAVAHLL 469
Query: 310 HCFNWELPLGISPNDLDMTERFGLAMPRSNHLLAMPTCRLVKPL 179
HCF WELP G+ P++LDMT+ FGL PR+ L+A+P R+V PL
Sbjct: 470 HCFTWELPDGMKPSELDMTDMFGLTAPRATRLVAVPRKRVVCPL 513
>emb|CAC26932.1| ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578895|emb|CAC26933.1| ferulate-5-hydroxylase
[Arabidopsis thaliana]
Length = 520
Score = 107 bits (266), Expect = 9e-23
Identities = 49/101 (48%), Positives = 68/101 (66%), Gaps = 1/101 (0%)
Frame = -2
Query: 487 DPKVWSNNADIFYPERFLNCNV-DLRGHDFQLIPFSSGRRGCPGINMGLVMVRLVVAQLV 311
DP W++ D F P RFL V D +G +F+ IPF SGRR CPG+ +GL + L VA ++
Sbjct: 418 DPTSWTD-PDTFRPSRFLEPGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHIL 476
Query: 310 HCFNWELPLGISPNDLDMTERFGLAMPRSNHLLAMPTCRLV 188
HCF W+LP G+ P++LDM + FGL P++ L A+PT RL+
Sbjct: 477 HCFTWKLPDGMKPSELDMNDVFGLTAPKATRLFAVPTTRLI 517
>emb|CAC26936.1| ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578903|emb|CAC26937.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578905|emb|CAC26938.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578907|emb|CAC26939.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578909|emb|CAC26940.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578911|emb|CAC26941.1| ferulate-5-hydroxylase
[Arabidopsis thaliana]
Length = 520
Score = 107 bits (266), Expect = 9e-23
Identities = 49/101 (48%), Positives = 68/101 (66%), Gaps = 1/101 (0%)
Frame = -2
Query: 487 DPKVWSNNADIFYPERFLNCNV-DLRGHDFQLIPFSSGRRGCPGINMGLVMVRLVVAQLV 311
DP W++ D F P RFL V D +G +F+ IPF SGRR CPG+ +GL + L VA ++
Sbjct: 418 DPTSWTD-PDTFRPSRFLEPGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHIL 476
Query: 310 HCFNWELPLGISPNDLDMTERFGLAMPRSNHLLAMPTCRLV 188
HCF W+LP G+ P++LDM + FGL P++ L A+PT RL+
Sbjct: 477 HCFTWKLPDGMKPSELDMNDVFGLTAPKATRLFAVPTTRLI 517
>ref|NP_195345.1| ferulate-5-hydroxylase (FAH1); protein id: At4g36220.1, supported
by cDNA: gi_1488254 [Arabidopsis thaliana]
gi|5921932|sp|Q42600|C84A_ARATH Cytochrome P450 84A1
(Ferulate-5-hydroxylase) (F5H) gi|7430674|pir||T04591
ferulate-5-hydroxylase (EC 1.-.-.-) - Arabidopsis
thaliana gi|1488255|gb|AAC49389.1|
ferulate-5-hydroxylase gi|2961381|emb|CAA18128.1|
ferulate-5-hydroxylase (FAH1) [Arabidopsis thaliana]
gi|3925365|gb|AAD11580.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|7270575|emb|CAB80293.1|
ferulate-5-hydroxylase (FAH1) [Arabidopsis thaliana]
gi|12578873|emb|CAC26922.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578875|emb|CAC26923.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578877|emb|CAC26924.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578879|emb|CAC26925.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578881|emb|CAC26926.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578883|emb|CAC26927.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578885|emb|CAC26928.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578887|emb|CAC26929.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578889|emb|CAC26930.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578891|emb|CAC26931.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
gi|12578897|emb|CAC26934.1| ferulate-5-hydroxylase
[Arabidopsis thaliana] gi|12578899|emb|CAC26935.1|
ferulate-5-hydroxylase [Arabidopsis thaliana]
Length = 520
Score = 107 bits (266), Expect = 9e-23
Identities = 49/101 (48%), Positives = 68/101 (66%), Gaps = 1/101 (0%)
Frame = -2
Query: 487 DPKVWSNNADIFYPERFLNCNV-DLRGHDFQLIPFSSGRRGCPGINMGLVMVRLVVAQLV 311
DP W++ D F P RFL V D +G +F+ IPF SGRR CPG+ +GL + L VA ++
Sbjct: 418 DPTSWTD-PDTFRPSRFLEPGVPDFKGSNFEFIPFGSGRRSCPGMQLGLYALDLAVAHIL 476
Query: 310 HCFNWELPLGISPNDLDMTERFGLAMPRSNHLLAMPTCRLV 188
HCF W+LP G+ P++LDM + FGL P++ L A+PT RL+
Sbjct: 477 HCFTWKLPDGMKPSELDMNDVFGLTAPKATRLFAVPTTRLI 517
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 410,128,696
Number of Sequences: 1393205
Number of extensions: 8625489
Number of successful extensions: 17508
Number of sequences better than 10.0: 1723
Number of HSP's better than 10.0 without gapping: 17025
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17328
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
