Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003443A_C01 KMC003443A_c01
(596 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201094.1| permease 1 - like protein; protein id: At5g6289... 211 7e-54
gb|AAK59508.2| putative permease 1 [Arabidopsis thaliana] 211 7e-54
gb|AAL76261.1|AF466824_1 putative permease 1 [Arabidopsis thaliana] 211 7e-54
ref|NP_199810.2| permease; protein id: At5g49990.1, supported by... 192 2e-48
dbj|BAB08803.1| permease [Arabidopsis thaliana] 192 2e-48
>ref|NP_201094.1| permease 1 - like protein; protein id: At5g62890.1 [Arabidopsis
thaliana] gi|10177467|dbj|BAB10858.1| permease 1
[Arabidopsis thaliana]
gi|21326025|gb|AAM47573.1|AF466198_1 putative permease 1
[Arabidopsis thaliana]
Length = 532
Score = 211 bits (536), Expect = 7e-54
Identities = 93/108 (86%), Positives = 104/108 (96%)
Frame = -1
Query: 596 KFILGFSIFLGLSIPQYFNEYTAINGFGPVHTGARWFNDIINVPFQSKPFVGGVVAYFLD 417
KFILGFS+FLGLSIPQYFNEYTAI G+GPVHTGARWFND++NVPF S+PFV G VA+FLD
Sbjct: 425 KFILGFSVFLGLSIPQYFNEYTAIKGYGPVHTGARWFNDMVNVPFSSEPFVAGSVAFFLD 484
Query: 416 NTLYKRDSAIRKDRGKHWWDKYKSFKGDTRSEEFYSLPFNLNKYFPSV 273
NTL+K+DS+IRKDRGKHWWDK++SFKGDTRSEEFYSLPFNLNKYFPSV
Sbjct: 485 NTLHKKDSSIRKDRGKHWWDKFRSFKGDTRSEEFYSLPFNLNKYFPSV 532
>gb|AAK59508.2| putative permease 1 [Arabidopsis thaliana]
Length = 360
Score = 211 bits (536), Expect = 7e-54
Identities = 93/108 (86%), Positives = 104/108 (96%)
Frame = -1
Query: 596 KFILGFSIFLGLSIPQYFNEYTAINGFGPVHTGARWFNDIINVPFQSKPFVGGVVAYFLD 417
KFILGFS+FLGLSIPQYFNEYTAI G+GPVHTGARWFND++NVPF S+PFV G VA+FLD
Sbjct: 253 KFILGFSVFLGLSIPQYFNEYTAIKGYGPVHTGARWFNDMVNVPFSSEPFVAGSVAFFLD 312
Query: 416 NTLYKRDSAIRKDRGKHWWDKYKSFKGDTRSEEFYSLPFNLNKYFPSV 273
NTL+K+DS+IRKDRGKHWWDK++SFKGDTRSEEFYSLPFNLNKYFPSV
Sbjct: 313 NTLHKKDSSIRKDRGKHWWDKFRSFKGDTRSEEFYSLPFNLNKYFPSV 360
>gb|AAL76261.1|AF466824_1 putative permease 1 [Arabidopsis thaliana]
Length = 216
Score = 211 bits (536), Expect = 7e-54
Identities = 93/108 (86%), Positives = 104/108 (96%)
Frame = -1
Query: 596 KFILGFSIFLGLSIPQYFNEYTAINGFGPVHTGARWFNDIINVPFQSKPFVGGVVAYFLD 417
KFILGFS+FLGLSIPQYFNEYTAI G+GPVHTGARWFND++NVPF S+PFV G VA+FLD
Sbjct: 109 KFILGFSVFLGLSIPQYFNEYTAIKGYGPVHTGARWFNDMVNVPFSSEPFVAGSVAFFLD 168
Query: 416 NTLYKRDSAIRKDRGKHWWDKYKSFKGDTRSEEFYSLPFNLNKYFPSV 273
NTL+K+DS+IRKDRGKHWWDK++SFKGDTRSEEFYSLPFNLNKYFPSV
Sbjct: 169 NTLHKKDSSIRKDRGKHWWDKFRSFKGDTRSEEFYSLPFNLNKYFPSV 216
>ref|NP_199810.2| permease; protein id: At5g49990.1, supported by cDNA: gi_20260475
[Arabidopsis thaliana] gi|20260476|gb|AAM13136.1|
permease [Arabidopsis thaliana]
Length = 528
Score = 192 bits (489), Expect = 2e-48
Identities = 85/107 (79%), Positives = 97/107 (90%)
Frame = -1
Query: 593 FILGFSIFLGLSIPQYFNEYTAINGFGPVHTGARWFNDIINVPFQSKPFVGGVVAYFLDN 414
FILGFSIFLGLSIPQYFNE+TAI G+GPVHTGARWFND++NVPF SK FVGG VAY LD
Sbjct: 422 FILGFSIFLGLSIPQYFNEHTAIKGYGPVHTGARWFNDMVNVPFSSKAFVGGCVAYLLDT 481
Query: 413 TLYKRDSAIRKDRGKHWWDKYKSFKGDTRSEEFYSLPFNLNKYFPSV 273
TL+K+D +IRKDRGKHWWD++ +FK D R+EEFY+LPFNLNKYFPSV
Sbjct: 482 TLHKKDGSIRKDRGKHWWDRFWTFKNDPRTEEFYALPFNLNKYFPSV 528
>dbj|BAB08803.1| permease [Arabidopsis thaliana]
Length = 483
Score = 192 bits (489), Expect = 2e-48
Identities = 85/107 (79%), Positives = 97/107 (90%)
Frame = -1
Query: 593 FILGFSIFLGLSIPQYFNEYTAINGFGPVHTGARWFNDIINVPFQSKPFVGGVVAYFLDN 414
FILGFSIFLGLSIPQYFNE+TAI G+GPVHTGARWFND++NVPF SK FVGG VAY LD
Sbjct: 377 FILGFSIFLGLSIPQYFNEHTAIKGYGPVHTGARWFNDMVNVPFSSKAFVGGCVAYLLDT 436
Query: 413 TLYKRDSAIRKDRGKHWWDKYKSFKGDTRSEEFYSLPFNLNKYFPSV 273
TL+K+D +IRKDRGKHWWD++ +FK D R+EEFY+LPFNLNKYFPSV
Sbjct: 437 TLHKKDGSIRKDRGKHWWDRFWTFKNDPRTEEFYALPFNLNKYFPSV 483
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 522,855,376
Number of Sequences: 1393205
Number of extensions: 11646373
Number of successful extensions: 26790
Number of sequences better than 10.0: 79
Number of HSP's better than 10.0 without gapping: 26002
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26728
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23140425222
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
