Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003442A_C01 KMC003442A_c01
(488 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566316.1| expressed protein; protein id: At3g07720.1, sup... 161 3e-39
dbj|BAB82454.1| D-protein [Hordeum vulgare] 150 6e-36
dbj|BAA96998.1| contains similarity to jasmonate inducible prote... 134 7e-31
gb|AAM63074.1| contains similarity to jasmonate inducible protei... 134 7e-31
ref|NP_568692.1| putative protein; protein id: At5g48180.1, supp... 134 7e-31
>ref|NP_566316.1| expressed protein; protein id: At3g07720.1, supported by cDNA:
gi_11993872, supported by cDNA: gi_13265422, supported
by cDNA: gi_14517447, supported by cDNA: gi_21280882
[Arabidopsis thaliana]
gi|6466955|gb|AAF13090.1|AC009176_17 unknown protein
[Arabidopsis thaliana]
gi|6648184|gb|AAF21182.1|AC013483_6 unknown protein
[Arabidopsis thaliana]
gi|11692832|gb|AAG40019.1|AF324668_1 MLP3.17
[Arabidopsis thaliana]
gi|11993873|gb|AAG42920.1|AF329503_1 unknown protein
[Arabidopsis thaliana] gi|14517448|gb|AAK62614.1|
AT3g07720/F17A17_6 [Arabidopsis thaliana]
gi|21280883|gb|AAM44920.1| unknown protein [Arabidopsis
thaliana] gi|23507767|gb|AAN38687.1| At3g07720/F17A17_6
[Arabidopsis thaliana]
Length = 329
Score = 161 bits (408), Expect = 3e-39
Identities = 75/106 (70%), Positives = 85/106 (79%)
Frame = -2
Query: 487 ETTGQKPTARSVFSNVSDGKHVIVYGGEIDPSDQGHMGAGQFSGEVYVLDTETLVWVRLE 308
ET G+KP+ARSVFS GK +++ GGEIDPSD GHMGAG F+G+ Y LDTETL W + E
Sbjct: 216 ETKGEKPSARSVFSTAVVGKQILISGGEIDPSDLGHMGAGCFTGDAYGLDTETLEWRKWE 275
Query: 307 DKVESGGHPGPRGWCAFAGAQRDGREGLLVYGGNSPSNDRLDDIFF 170
D V S HPGPRGWCAFA RDG++GLLVYGGNSPSNDRLDDIFF
Sbjct: 276 DGVGSVEHPGPRGWCAFAAGSRDGKQGLLVYGGNSPSNDRLDDIFF 321
Score = 33.9 bits (76), Expect = 1.0
Identities = 29/104 (27%), Positives = 42/104 (39%), Gaps = 2/104 (1%)
Frame = -2
Query: 478 GQKPTARSVFSNVSDGKHVIVYGGEIDPSDQGHMGAGQFSGEVYVLDTETLVWVRLEDKV 299
G P ARS + G + +GGE P ++YV D ET W E
Sbjct: 17 GTGPGARSSHAIALVGNKMYAFGGEFQP-------RVPVDNQLYVFDLETQTWSIQE--- 66
Query: 298 ESGGHPGPRGWCAFAGAQRDGREGLLVY--GGNSPSNDRLDDIF 173
SG P PR A A G ++Y GG ++ L++++
Sbjct: 67 ASGDAPPPRVGVAMAAV------GPIIYFFGGRDSTHQELNELY 104
>dbj|BAB82454.1| D-protein [Hordeum vulgare]
Length = 327
Score = 150 bits (380), Expect = 6e-36
Identities = 68/105 (64%), Positives = 81/105 (76%)
Frame = -2
Query: 487 ETTGQKPTARSVFSNVSDGKHVIVYGGEIDPSDQGHMGAGQFSGEVYVLDTETLVWVRLE 308
+TTG KPT RSV GKHV+V+GGE+DPSD GH+GAG+FS E +VLDT+T W RL+
Sbjct: 217 DTTGDKPTPRSVLCAAGVGKHVVVFGGEVDPSDLGHLGAGKFSAEAFVLDTDTGAWARLD 276
Query: 307 DKVESGGHPGPRGWCAFAGAQRDGREGLLVYGGNSPSNDRLDDIF 173
D SG HPGPRGWCAF+ DGR G+LVYGGNSP+NDRL D+F
Sbjct: 277 D-AGSGHHPGPRGWCAFSAGALDGRRGMLVYGGNSPTNDRLGDMF 320
>dbj|BAA96998.1| contains similarity to jasmonate inducible protein~gene_id:MIF21.7
[Arabidopsis thaliana]
Length = 301
Score = 134 bits (336), Expect = 7e-31
Identities = 66/110 (60%), Positives = 79/110 (71%)
Frame = -2
Query: 487 ETTGQKPTARSVFSNVSDGKHVIVYGGEIDPSDQGHMGAGQFSGEVYVLDTETLVWVRLE 308
ETTG P ARSVF VS GK++++YGGE +P + HMGAG+ SGEVY LDTETLVW R+
Sbjct: 188 ETTGDVPAARSVFPAVSYGKYIVIYGGEEEPHELMHMGAGKMSGEVYQLDTETLVWERIV 247
Query: 307 DKVESGGHPGPRGWCAFAGAQRDGREGLLVYGGNSPSNDRLDDIFFLALS 158
E P RGWCAF A +DG EGLLV+GGNSP+N+RLDD+ F S
Sbjct: 248 CGNEE-EKPSQRGWCAFTKAVKDGEEGLLVHGGNSPTNERLDDLVFWGFS 296
>gb|AAM63074.1| contains similarity to jasmonate inducible protein [Arabidopsis
thaliana]
Length = 326
Score = 134 bits (336), Expect = 7e-31
Identities = 66/110 (60%), Positives = 79/110 (71%)
Frame = -2
Query: 487 ETTGQKPTARSVFSNVSDGKHVIVYGGEIDPSDQGHMGAGQFSGEVYVLDTETLVWVRLE 308
ETTG P ARSVF VS GK++++YGGE +P + HMGAG+ SGEVY LDTETLVW R+
Sbjct: 213 ETTGDVPAARSVFPAVSYGKYIVIYGGEEEPHELMHMGAGKMSGEVYQLDTETLVWERIV 272
Query: 307 DKVESGGHPGPRGWCAFAGAQRDGREGLLVYGGNSPSNDRLDDIFFLALS 158
E P RGWCAF A +DG EGLLV+GGNSP+N+RLDD+ F S
Sbjct: 273 CGNEE-EKPSQRGWCAFTKAVKDGEEGLLVHGGNSPTNERLDDLVFWGFS 321
>ref|NP_568692.1| putative protein; protein id: At5g48180.1, supported by cDNA:
19110., supported by cDNA: gi_16649164, supported by
cDNA: gi_20148580 [Arabidopsis thaliana]
gi|16649165|gb|AAL24434.1| Unknown protein [Arabidopsis
thaliana] gi|20148581|gb|AAM10181.1| unknown protein
[Arabidopsis thaliana]
Length = 326
Score = 134 bits (336), Expect = 7e-31
Identities = 66/110 (60%), Positives = 79/110 (71%)
Frame = -2
Query: 487 ETTGQKPTARSVFSNVSDGKHVIVYGGEIDPSDQGHMGAGQFSGEVYVLDTETLVWVRLE 308
ETTG P ARSVF VS GK++++YGGE +P + HMGAG+ SGEVY LDTETLVW R+
Sbjct: 213 ETTGDVPAARSVFPAVSYGKYIVIYGGEEEPHELMHMGAGKMSGEVYQLDTETLVWERIV 272
Query: 307 DKVESGGHPGPRGWCAFAGAQRDGREGLLVYGGNSPSNDRLDDIFFLALS 158
E P RGWCAF A +DG EGLLV+GGNSP+N+RLDD+ F S
Sbjct: 273 CGNEE-EKPSQRGWCAFTKAVKDGEEGLLVHGGNSPTNERLDDLVFWGFS 321
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 477,016,711
Number of Sequences: 1393205
Number of extensions: 11712395
Number of successful extensions: 34549
Number of sequences better than 10.0: 102
Number of HSP's better than 10.0 without gapping: 32232
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34307
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 14271597018
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
