Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003441A_C01 KMC003441A_c01
(679 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC56854.1| squalene synthase [Lotus japonicus] 181 8e-45
emb|CAD23250.1| farnesyl-diphosphate farnesyltransferase [Medica... 159 3e-38
pir||JC5031 farnesyl-diphosphate farnesyltransferase (EC 2.5.1.2... 154 1e-36
pir||T05262 farnesyl-diphosphate farnesyltransferase (EC 2.5.1.2... 152 4e-36
pir||JC5030 farnesyl-diphosphate farnesyltransferase (EC 2.5.1.2... 142 5e-33
>dbj|BAC56854.1| squalene synthase [Lotus japonicus]
Length = 413
Score = 181 bits (459), Expect = 8e-45
Identities = 92/94 (97%), Positives = 93/94 (98%)
Frame = -1
Query: 679 KVIDRTKTFADVYGAFFDFASMLESKVDKNDPNATKTLSRLVAIQKTCRESGLLNKRKSY 500
KVIDRTKT ADVYGAFFDFASMLESKVDKNDPNATKTLSRLVAIQKTCRESGLLNKRKSY
Sbjct: 320 KVIDRTKTIADVYGAFFDFASMLESKVDKNDPNATKTLSRLVAIQKTCRESGLLNKRKSY 379
Query: 499 ILRKENGYGSTLIIILVLLFSIMFAYNSATRHSN 398
ILRKENGYGSTLIIILVLLFSIMFAY+SATRHSN
Sbjct: 380 ILRKENGYGSTLIIILVLLFSIMFAYSSATRHSN 413
>emb|CAD23250.1| farnesyl-diphosphate farnesyltransferase [Medicago truncatula]
Length = 413
Score = 159 bits (402), Expect = 3e-38
Identities = 78/94 (82%), Positives = 87/94 (91%)
Frame = -1
Query: 679 KVIDRTKTFADVYGAFFDFASMLESKVDKNDPNATKTLSRLVAIQKTCRESGLLNKRKSY 500
KVIDRTKT ADVYGAFFDFAS+LESKVDKNDPNATKT SRL AIQKTCRESGLL KRKSY
Sbjct: 320 KVIDRTKTMADVYGAFFDFASVLESKVDKNDPNATKTSSRLEAIQKTCRESGLLTKRKSY 379
Query: 499 ILRKENGYGSTLIIILVLLFSIMFAYNSATRHSN 398
+LR E+GYGST+I++LV+LFSI+FAY SA RH+N
Sbjct: 380 VLRNESGYGSTMILLLVILFSIIFAYLSANRHNN 413
>pir||JC5031 farnesyl-diphosphate farnesyltransferase (EC 2.5.1.21) 2 -
Glycyrrhiza glabra L gi|1449165|dbj|BAA13084.1| squalene
synthase [Glycyrrhiza glabra]
Length = 412
Score = 154 bits (389), Expect = 1e-36
Identities = 79/94 (84%), Positives = 84/94 (89%)
Frame = -1
Query: 679 KVIDRTKTFADVYGAFFDFASMLESKVDKNDPNATKTLSRLVAIQKTCRESGLLNKRKSY 500
KVIDRTKT DVYGAFFDFASMLESKVDKNDPNATKTLSRL AIQKTCRESGLLNKRKS
Sbjct: 320 KVIDRTKTMGDVYGAFFDFASMLESKVDKNDPNATKTLSRLEAIQKTCRESGLLNKRKS- 378
Query: 499 ILRKENGYGSTLIIILVLLFSIMFAYNSATRHSN 398
+LR NGYGST+I+ILV+LF IMFAY SA H+N
Sbjct: 379 LLRNGNGYGSTMILILVILFGIMFAYLSANHHNN 412
>pir||T05262 farnesyl-diphosphate farnesyltransferase (EC 2.5.1.21) - soybean
gi|2463569|dbj|BAA22559.1| squalene synthase [Glycine
max]
Length = 413
Score = 152 bits (384), Expect = 4e-36
Identities = 75/94 (79%), Positives = 85/94 (89%)
Frame = -1
Query: 679 KVIDRTKTFADVYGAFFDFASMLESKVDKNDPNATKTLSRLVAIQKTCRESGLLNKRKSY 500
KVIDRTKT ADVYGAFFDFASMLE KVDKNDPNATKTLSRL AIQKTCRESGLL+KRKSY
Sbjct: 320 KVIDRTKTMADVYGAFFDFASMLEPKVDKNDPNATKTLSRLEAIQKTCRESGLLSKRKSY 379
Query: 499 ILRKENGYGSTLIIILVLLFSIMFAYNSATRHSN 398
I+ E+GYGST+I+ILV++ SI+FAY SA H++
Sbjct: 380 IVNDESGYGSTMIVILVIMVSIIFAYLSANHHNS 413
>pir||JC5030 farnesyl-diphosphate farnesyltransferase (EC 2.5.1.21) 1 -
Glycyrrhiza glabra L gi|1449163|dbj|BAA13083.1| squalene
synthase [Glycyrrhiza glabra]
Length = 413
Score = 142 bits (357), Expect = 5e-33
Identities = 71/94 (75%), Positives = 81/94 (85%)
Frame = -1
Query: 679 KVIDRTKTFADVYGAFFDFASMLESKVDKNDPNATKTLSRLVAIQKTCRESGLLNKRKSY 500
KVIDRTKT ADVYGAFFDF+ ML+SKVDKNDPNATKTLSRL AIQKTCRESGLL+KRK Y
Sbjct: 320 KVIDRTKTMADVYGAFFDFSCMLKSKVDKNDPNATKTLSRLEAIQKTCRESGLLSKRKPY 379
Query: 499 ILRKENGYGSTLIIILVLLFSIMFAYNSATRHSN 398
ILR E+ ST+++ILV++ SI+FAY SA R N
Sbjct: 380 ILRNESTNSSTMVLILVIILSIIFAYLSAKRQDN 413
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 557,195,552
Number of Sequences: 1393205
Number of extensions: 11661693
Number of successful extensions: 28093
Number of sequences better than 10.0: 35
Number of HSP's better than 10.0 without gapping: 27216
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 28077
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29987172312
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
