Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003439A_C01 KMC003439A_c01
(487 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK32797.1|AF361629_1 T3B23.2/T3B23.2 [Arabidopsis thaliana] ... 47 9e-05
ref|NP_565668.1| expressed protein; protein id: At2g28305.1, sup... 47 9e-05
gb|AAN61486.1| Putative lysine decarboxylase-like protein [Oryza... 46 2e-04
gb|AAG13575.1|AC037425_6 unknown protein [Oryza sativa] 45 3e-04
ref|NP_181258.1| hypothetical protein; protein id: At2g37210.1 [... 44 7e-04
>gb|AAK32797.1|AF361629_1 T3B23.2/T3B23.2 [Arabidopsis thaliana] gi|19548083|gb|AAL87406.1|
T3B23.2/T3B23.2 [Arabidopsis thaliana]
Length = 213
Score = 47.4 bits (111), Expect = 9e-05
Identities = 22/38 (57%), Positives = 28/38 (72%)
Frame = -1
Query: 484 ARHIIVSAHTAQDLMCKVEEYVPMHSGAGPKLSWEEEQ 371
ARHIIVSA +A++L+ K+E+YVP H K SWE EQ
Sbjct: 165 ARHIIVSAPSAKELVKKLEDYVPRHEKVASKKSWEMEQ 202
>ref|NP_565668.1| expressed protein; protein id: At2g28305.1, supported by cDNA:
23166., supported by cDNA: gi_13605606, supported by
cDNA: gi_19548082 [Arabidopsis thaliana]
gi|20197602|gb|AAM15149.1| expressed protein
[Arabidopsis thaliana] gi|20197733|gb|AAM15229.1|
expressed protein [Arabidopsis thaliana]
gi|21592387|gb|AAM64338.1| unknown [Arabidopsis
thaliana]
Length = 213
Score = 47.4 bits (111), Expect = 9e-05
Identities = 22/38 (57%), Positives = 28/38 (72%)
Frame = -1
Query: 484 ARHIIVSAHTAQDLMCKVEEYVPMHSGAGPKLSWEEEQ 371
ARHIIVSA +A++L+ K+E+YVP H K SWE EQ
Sbjct: 165 ARHIIVSAPSAKELVKKLEDYVPRHEKVASKKSWEMEQ 202
>gb|AAN61486.1| Putative lysine decarboxylase-like protein [Oryza sativa (japonica
cultivar-group)]
Length = 211
Score = 45.8 bits (107), Expect = 2e-04
Identities = 22/36 (61%), Positives = 26/36 (72%)
Frame = -1
Query: 487 AARHIIVSAHTAQDLMCKVEEYVPMHSGAGPKLSWE 380
+AR IIVSA TAQ+LM K+EEYVP H L+WE
Sbjct: 170 SARRIIVSAPTAQELMDKLEEYVPYHDRVASGLNWE 205
>gb|AAG13575.1|AC037425_6 unknown protein [Oryza sativa]
Length = 204
Score = 45.4 bits (106), Expect = 3e-04
Identities = 21/36 (58%), Positives = 26/36 (71%)
Frame = -1
Query: 487 AARHIIVSAHTAQDLMCKVEEYVPMHSGAGPKLSWE 380
+AR IIV A TA++LM K+EEYVP H KL+WE
Sbjct: 163 SARRIIVMAPTAEELMDKLEEYVPYHDRVASKLNWE 198
>ref|NP_181258.1| hypothetical protein; protein id: At2g37210.1 [Arabidopsis
thaliana] gi|20197715|gb|AAD18138.2| hypothetical
protein [Arabidopsis thaliana]
Length = 202
Score = 44.3 bits (103), Expect = 7e-04
Identities = 21/38 (55%), Positives = 26/38 (68%)
Frame = -1
Query: 484 ARHIIVSAHTAQDLMCKVEEYVPMHSGAGPKLSWEEEQ 371
AR IIVSA TA++L+ K+EEY P H KL WE E+
Sbjct: 158 AREIIVSAPTAKELVKKLEEYAPCHERVATKLCWEMER 195
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 386,560,925
Number of Sequences: 1393205
Number of extensions: 7386894
Number of successful extensions: 14894
Number of sequences better than 10.0: 28
Number of HSP's better than 10.0 without gapping: 14623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14889
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13980339936
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
