Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003436A_C01 KMC003436A_c01
(684 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_175880.1| heme activated protein, putative; protein id: A... 97 2e-19
emb|CAA74054.1| Transcription factor [Arabidopsis thaliana] 96 5e-19
ref|NP_190428.1| transcription factor Hap5a; protein id: At3g485... 96 5e-19
pir||E86221 hypothetical protein [imported] - Arabidopsis thalia... 94 2e-18
ref|NP_172371.1| putative transcription factor; protein id: At1g... 94 2e-18
>ref|NP_175880.1| heme activated protein, putative; protein id: At1g54830.1
[Arabidopsis thaliana] gi|3776575|gb|AAC64892.1| Similar
to Schizosaccharomyces CCAAT-binding factor F7G19.16
gi|1922964 from Arabidopsis thaliana BAC gb|AC000106.
EST gb|H36963 comes from this gene
gi|12322158|gb|AAG51114.1|AC069144_11 heme activated
protein, putative [Arabidopsis thaliana]
gi|17065398|gb|AAL32853.1| Unknown protein [Arabidopsis
thaliana] gi|20148651|gb|AAM10216.1| unknown protein
[Arabidopsis thaliana] gi|21593110|gb|AAM65059.1| heme
activated protein, putative [Arabidopsis thaliana]
Length = 217
Score = 97.4 bits (241), Expect = 2e-19
Identities = 59/105 (56%), Positives = 65/105 (61%), Gaps = 1/105 (0%)
Frame = -3
Query: 682 KNDIAAAITRTDIFDFLVDIVPREDLKDEVLATMPGGAMPVAGPGDGLPYCYMPPQHAQQ 503
KNDIAAA+TRTDIFDFLVDIVPREDL+DEVL GG A G PY Y+PP A
Sbjct: 126 KNDIAAAVTRTDIFDFLVDIVPREDLRDEVL----GGVGAEAATAAGYPYGYLPPGTAPI 181
Query: 502 VGPGGVMMHKPVMDPNMYAMQPDPFMAPPMWLQP-PEQQQSSPDH 371
PG VM N A P+P+M PMW QP PEQQ PD+
Sbjct: 182 GNPGMVM-------GNPGAYPPNPYMGQPMWQQPGPEQQ--DPDN 217
>emb|CAA74054.1| Transcription factor [Arabidopsis thaliana]
Length = 155
Score = 95.9 bits (237), Expect = 5e-19
Identities = 51/91 (56%), Positives = 61/91 (66%)
Frame = -3
Query: 682 KNDIAAAITRTDIFDFLVDIVPREDLKDEVLATMPGGAMPVAGPGDGLPYCYMPPQHAQQ 503
KNDIAAAITRTDIFDFLVDIVPR+++KDE A + GG M VA G+PY Y P Q
Sbjct: 42 KNDIAAAITRTDIFDFLVDIVPRDEIKDE--AAVLGGGMVVAPTASGVPYYY--PPMGQP 97
Query: 502 VGPGGVMMHKPVMDPNMYAMQPDPFMAPPMW 410
GPGG+M+ +P MDPN +QP +W
Sbjct: 98 AGPGGMMIGRPAMDPNGVYVQPPSQAWQSVW 128
>ref|NP_190428.1| transcription factor Hap5a; protein id: At3g48590.1, supported by
cDNA: 21604., supported by cDNA: gi_20260195
[Arabidopsis thaliana] gi|11358886|pir||T46203
transcription factor Hap5a - Arabidopsis thaliana
gi|6523090|emb|CAB62348.1| transcription factor Hap5a
[Arabidopsis thaliana] gi|20260196|gb|AAM12996.1|
transcription factor Hap5a [Arabidopsis thaliana]
gi|21554251|gb|AAM63326.1| transcription factor Hap5a
[Arabidopsis thaliana] gi|24899757|gb|AAN65093.1|
transcription factor Hap5a [Arabidopsis thaliana]
Length = 234
Score = 95.9 bits (237), Expect = 5e-19
Identities = 51/91 (56%), Positives = 61/91 (66%)
Frame = -3
Query: 682 KNDIAAAITRTDIFDFLVDIVPREDLKDEVLATMPGGAMPVAGPGDGLPYCYMPPQHAQQ 503
KNDIAAAITRTDIFDFLVDIVPR+++KDE A + GG M VA G+PY Y P Q
Sbjct: 121 KNDIAAAITRTDIFDFLVDIVPRDEIKDE--AAVLGGGMVVAPTASGVPYYY--PPMGQP 176
Query: 502 VGPGGVMMHKPVMDPNMYAMQPDPFMAPPMW 410
GPGG+M+ +P MDPN +QP +W
Sbjct: 177 AGPGGMMIGRPAMDPNGVYVQPPSQAWQSVW 207
>pir||E86221 hypothetical protein [imported] - Arabidopsis thaliana
gi|1922964|gb|AAB70410.1| Similar to Schizosaccharomyces
CCAAT-binding factor (gb|U88525). EST gb|T04310 comes
from this gene. [Arabidopsis thaliana]
Length = 208
Score = 94.0 bits (232), Expect = 2e-18
Identities = 54/103 (52%), Positives = 66/103 (63%)
Frame = -3
Query: 682 KNDIAAAITRTDIFDFLVDIVPREDLKDEVLATMPGGAMPVAGPGDGLPYCYMPPQHAQQ 503
KNDIAAA+TRTDIFDFLVDIVPREDL+DEVL ++P G +P A G PY Y+P A
Sbjct: 113 KNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAA-GYPYGYLPAGTA-P 170
Query: 502 VGPGGVMMHKPVMDPNMYAMQPDPFMAPPMWLQPPEQQQSSPD 374
+G G++M P A P+P+M PMW QQ +PD
Sbjct: 171 IGNPGMVMGNP-----GGAYPPNPYMGQPMW------QQQAPD 202
>ref|NP_172371.1| putative transcription factor; protein id: At1g08970.1, supported
by cDNA: 1911. [Arabidopsis thaliana]
gi|21553992|gb|AAM63073.1| putative transcription factor
[Arabidopsis thaliana] gi|22022532|gb|AAM83224.1|
At1g08970/F7G19_16 [Arabidopsis thaliana]
gi|23505813|gb|AAN28766.1| At1g08970/F7G19_16
[Arabidopsis thaliana]
Length = 231
Score = 94.0 bits (232), Expect = 2e-18
Identities = 54/103 (52%), Positives = 66/103 (63%)
Frame = -3
Query: 682 KNDIAAAITRTDIFDFLVDIVPREDLKDEVLATMPGGAMPVAGPGDGLPYCYMPPQHAQQ 503
KNDIAAA+TRTDIFDFLVDIVPREDL+DEVL ++P G +P A G PY Y+P A
Sbjct: 136 KNDIAAAVTRTDIFDFLVDIVPREDLRDEVLGSIPRGTVPEAAAA-GYPYGYLPAGTA-P 193
Query: 502 VGPGGVMMHKPVMDPNMYAMQPDPFMAPPMWLQPPEQQQSSPD 374
+G G++M P A P+P+M PMW QQ +PD
Sbjct: 194 IGNPGMVMGNP-----GGAYPPNPYMGQPMW------QQQAPD 225
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 602,466,483
Number of Sequences: 1393205
Number of extensions: 14266882
Number of successful extensions: 45622
Number of sequences better than 10.0: 93
Number of HSP's better than 10.0 without gapping: 42017
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45299
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 30552968016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
