Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003434A_C01 KMC003434A_c01
(558 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566244.1| expressed protein; protein id: At3g05010.1, sup... 202 2e-51
gb|AAG51409.1|AC009465_9 unknown protein; 15342-13483 [Arabidops... 194 6e-49
gb|AAM47585.1| putative expressed protein [Sorghum bicolor] 191 7e-48
gb|AAM67148.1| unknown [Arabidopsis thaliana] 184 5e-46
ref|NP_198073.1| putative protein; protein id: At5g27210.1, supp... 184 5e-46
>ref|NP_566244.1| expressed protein; protein id: At3g05010.1, supported by cDNA:
gi_15028250 [Arabidopsis thaliana]
gi|15028251|gb|AAK76714.1| unknown protein [Arabidopsis
thaliana]
Length = 300
Score = 202 bits (515), Expect = 2e-51
Identities = 88/115 (76%), Positives = 102/115 (88%)
Frame = -2
Query: 557 LWVVHKLVLTLVYGLILFMYHSRWRERLPARPAFYKYVTVMFILNAIALFACGLTGSGAA 378
LWV+HKL+L +YG+I FMY+S+WRERLPARPAFYKY+TVM LN ++LFAC LT +GA
Sbjct: 185 LWVIHKLLLAGIYGMIFFMYNSKWRERLPARPAFYKYITVMLALNGLSLFACALTANGAH 244
Query: 377 FGFWFYRVTVVCYHAFYLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFFESDW 213
FG W Y +T VCYHAFYLPLLY+TFLADFFQEEDLNLENVYYSEMKDAGFF++DW
Sbjct: 245 FGLWLYGITSVCYHAFYLPLLYVTFLADFFQEEDLNLENVYYSEMKDAGFFDADW 299
>gb|AAG51409.1|AC009465_9 unknown protein; 15342-13483 [Arabidopsis thaliana]
Length = 311
Score = 194 bits (493), Expect = 6e-49
Identities = 88/126 (69%), Positives = 102/126 (80%), Gaps = 11/126 (8%)
Frame = -2
Query: 557 LWVVHKLVLTLVYGLILFMYHSRWRERLP-----------ARPAFYKYVTVMFILNAIAL 411
LWV+HKL+L +YG+I FMY+S+WRERLP ARPAFYKY+TVM LN ++L
Sbjct: 185 LWVIHKLLLAGIYGMIFFMYNSKWRERLPGEYIDHSYPPYARPAFYKYITVMLALNGLSL 244
Query: 410 FACGLTGSGAAFGFWFYRVTVVCYHAFYLPLLYITFLADFFQEEDLNLENVYYSEMKDAG 231
FAC LT +GA FG W Y +T VCYHAFYLPLLY+TFLADFFQEEDLNLENVYYSEMKDAG
Sbjct: 245 FACALTANGAHFGLWLYGITSVCYHAFYLPLLYVTFLADFFQEEDLNLENVYYSEMKDAG 304
Query: 230 FFESDW 213
FF++DW
Sbjct: 305 FFDADW 310
>gb|AAM47585.1| putative expressed protein [Sorghum bicolor]
Length = 271
Score = 191 bits (484), Expect = 7e-48
Identities = 82/116 (70%), Positives = 99/116 (84%)
Frame = -2
Query: 557 LWVVHKLVLTLVYGLILFMYHSRWRERLPARPAFYKYVTVMFILNAIALFACGLTGSGAA 378
LW++HKLVLT VYGLI+FM+HSRWR+RLPA+PA+Y YV M +LN ++LF C L SGA
Sbjct: 156 LWILHKLVLTGVYGLIVFMHHSRWRDRLPAKPAYYNYVCAMLLLNGLSLFGCFLIASGAG 215
Query: 377 FGFWFYRVTVVCYHAFYLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFFESDWN 210
FG W Y +T VCYH+ YLPLLY+TFLADFFQEED+ LENVYYSEMKDAGFF++DW+
Sbjct: 216 FGLWLYNLTTVCYHSLYLPLLYVTFLADFFQEEDMLLENVYYSEMKDAGFFDADWD 271
>gb|AAM67148.1| unknown [Arabidopsis thaliana]
Length = 297
Score = 184 bits (468), Expect = 5e-46
Identities = 81/115 (70%), Positives = 95/115 (82%)
Frame = -2
Query: 557 LWVVHKLVLTLVYGLILFMYHSRWRERLPARPAFYKYVTVMFILNAIALFACGLTGSGAA 378
LW++HKL+LT VYG++ MY+SRWRE+LPARPAFY Y+ +MF L ++ L A T + A
Sbjct: 182 LWIIHKLLLTGVYGMVFLMYNSRWREKLPARPAFYNYIIIMFALYSLYLVASAFTANNAH 241
Query: 377 FGFWFYRVTVVCYHAFYLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFFESDW 213
FGFW Y + VCYHA YLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFF+SDW
Sbjct: 242 FGFWLYGIMSVCYHALYLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFFDSDW 296
>ref|NP_198073.1| putative protein; protein id: At5g27210.1, supported by cDNA:
96808., supported by cDNA: gi_14532471 [Arabidopsis
thaliana]
Length = 297
Score = 184 bits (468), Expect = 5e-46
Identities = 81/115 (70%), Positives = 95/115 (82%)
Frame = -2
Query: 557 LWVVHKLVLTLVYGLILFMYHSRWRERLPARPAFYKYVTVMFILNAIALFACGLTGSGAA 378
LW++HKL+LT VYG++ MY+SRWRE+LPARPAFY Y+ +MF L ++ L A T + A
Sbjct: 182 LWIIHKLLLTGVYGMVFLMYNSRWREKLPARPAFYNYIIIMFALYSLYLVASAFTANNAH 241
Query: 377 FGFWFYRVTVVCYHAFYLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFFESDW 213
FGFW Y + VCYHA YLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFF+SDW
Sbjct: 242 FGFWLYGIMSVCYHALYLPLLYITFLADFFQEEDLNLENVYYSEMKDAGFFDSDW 296
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 460,616,847
Number of Sequences: 1393205
Number of extensions: 9513787
Number of successful extensions: 24457
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 23728
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24431
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19808345223
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
