Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003432A_C01 KMC003432A_c01
(601 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB90159.1| P0408G07.5 [Oryza sativa (japonica cultivar-group)] 63 3e-09
ref|NP_176081.1| hypothetical protein; protein id: At1g57680.1, ... 48 1e-04
gb|ZP_00016151.1| hypothetical protein [Rhodospirillum rubrum] 44 0.002
gb|AAM78093.1| At2g29210/F16P2.41 [Arabidopsis thaliana] gi|2330... 38 0.11
ref|NP_180484.1| putative proline-rich protein; protein id: At2g... 38 0.11
>dbj|BAB90159.1| P0408G07.5 [Oryza sativa (japonica cultivar-group)]
Length = 397
Score = 63.2 bits (152), Expect = 3e-09
Identities = 35/78 (44%), Positives = 47/78 (59%)
Frame = -1
Query: 586 RVLSLVINKGLRVRICALAVVVLVGIPIQVMALGFTALWTPKDEVYGVVSLAVFLGAFCC 407
RVLSLVINK LR R+ L + VL +PI+V+ LGF+ L P D + V+ FL C
Sbjct: 219 RVLSLVINKALRRRVSLLMLSVLFFLPIRVLLLGFSVLPQPGDVAFEVIIFLSFLMMISC 278
Query: 406 AVTGEGILVIKPISDALA 353
G +LV P++D+LA
Sbjct: 279 TTVGVLLLVYYPVADSLA 296
>ref|NP_176081.1| hypothetical protein; protein id: At1g57680.1, supported by cDNA:
gi_18176029 [Arabidopsis thaliana]
gi|25373136|pir||B96611 hypothetical protein T8L23.15
[imported] - Arabidopsis thaliana
gi|12321352|gb|AAG50748.1|AC079733_16 hypothetical
protein [Arabidopsis thaliana]
gi|18176030|gb|AAL59971.1| unknown protein [Arabidopsis
thaliana] gi|22136846|gb|AAM91767.1| unknown protein
[Arabidopsis thaliana]
Length = 362
Score = 47.8 bits (112), Expect = 1e-04
Identities = 26/81 (32%), Positives = 43/81 (52%)
Frame = -1
Query: 586 RVLSLVINKGLRVRICALAVVVLVGIPIQVMALGFTALWTPKDEVYGVVSLAVFLGAFCC 407
++L LVINK L+ R+ L V +P++++ L + L ++ +S FL FC
Sbjct: 223 QILKLVINKRLQKRVYTLIFSVSSFLPLRIVMLCLSVLTAADKIIFEALSFLAFLSLFCF 282
Query: 406 AVTGEGILVIKPISDALAAGG 344
V +LV P+SD++A G
Sbjct: 283 CVVSICLLVYFPVSDSMALRG 303
>gb|ZP_00016151.1| hypothetical protein [Rhodospirillum rubrum]
Length = 540
Score = 43.9 bits (102), Expect = 0.002
Identities = 37/111 (33%), Positives = 48/111 (42%), Gaps = 1/111 (0%)
Frame = +1
Query: 226 KLPSYPPSRQTLRRRRGDPPSSPAAATSFWA-LEAPICKSFHQRPTRPR*A*SQEFPRL* 402
+ PS PSR RR PPS P+ + F + L C H P R R FPR
Sbjct: 407 RAPSPSPSRSRFRR---PPPSRPSPSRPFPSRLRRRRC---HPPPRRRRPRPRPSFPRAC 460
Query: 403 QHNKTRRETPRAKRRRKPHPWGSTAP*NRAPSPGWEYPQAQQPPKRKSSPS 555
+ RR PR +RR P P +PS G + Q Q P + +S+ S
Sbjct: 461 PRSSPRRSRPRRRRRSFPKP---------SPSSGRRFFQNQWPSRSRSASS 502
>gb|AAM78093.1| At2g29210/F16P2.41 [Arabidopsis thaliana]
gi|23308459|gb|AAN18199.1| At2g29210/F16P2.41
[Arabidopsis thaliana]
Length = 878
Score = 37.7 bits (86), Expect = 0.11
Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 13/198 (6%)
Frame = +1
Query: 22 NNNTRKPRSINYN*KLKEKRFRLNYRIRERERKNVNVFFFHNKKLYMRPTTCTQSVHRMT 201
+N+ R+ RS + L +R R++ R R R + + + RPT H
Sbjct: 255 SNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPI--------RRHRRPT------HEGR 300
Query: 202 KKSLINITKLPSYPPSRQTLRRRRGDPPSSPAAATSFWALEAPICKSFHQRPTRPR*A*S 381
++S + S PS RRR PP+ + S A H+ PT P
Sbjct: 301 RQSPAPSRRRRS--PSPPARRRRSPSPPARRRRSPSPPARR-------HRSPTPPARQRR 351
Query: 382 QEFPRL*QHN------KTRRETPRAKRRRKPHPWG----STAP---*NRAPSPGWEYPQA 522
P +H + R +P A+RRR P P S +P NR+PSP + ++
Sbjct: 352 SPSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRS 411
Query: 523 QQPPKRKSSPSIPY*SPA 576
+ P ++ P SP+
Sbjct: 412 RSPLAKRGRSDSPGRSPS 429
>ref|NP_180484.1| putative proline-rich protein; protein id: At2g29210.1 [Arabidopsis
thaliana] gi|25408026|pir||G84693 probable proline-rich
protein [imported] - Arabidopsis thaliana
gi|3980411|gb|AAC95214.1| putative proline-rich protein
[Arabidopsis thaliana]
Length = 891
Score = 37.7 bits (86), Expect = 0.11
Identities = 50/198 (25%), Positives = 79/198 (39%), Gaps = 13/198 (6%)
Frame = +1
Query: 22 NNNTRKPRSINYN*KLKEKRFRLNYRIRERERKNVNVFFFHNKKLYMRPTTCTQSVHRMT 201
+N+ R+ RS + L +R R++ R R R + + + RPT H
Sbjct: 268 SNSRRRSRSRSVRRSLSPRRRRIHSPFRSRSRSPI--------RRHRRPT------HEGR 313
Query: 202 KKSLINITKLPSYPPSRQTLRRRRGDPPSSPAAATSFWALEAPICKSFHQRPTRPR*A*S 381
++S + S PS RRR PP+ + S A H+ PT P
Sbjct: 314 RQSPAPSRRRRS--PSPPARRRRSPSPPARRRRSPSPPARR-------HRSPTPPARQRR 364
Query: 382 QEFPRL*QHN------KTRRETPRAKRRRKPHPWG----STAP---*NRAPSPGWEYPQA 522
P +H + R +P A+RRR P P S +P NR+PSP + ++
Sbjct: 365 SPSPPARRHRSPPPARRRRSPSPPARRRRSPSPPARRRRSPSPLYRRNRSPSPLYRRNRS 424
Query: 523 QQPPKRKSSPSIPY*SPA 576
+ P ++ P SP+
Sbjct: 425 RSPLAKRGRSDSPGRSPS 442
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 582,947,954
Number of Sequences: 1393205
Number of extensions: 14299829
Number of successful extensions: 54775
Number of sequences better than 10.0: 140
Number of HSP's better than 10.0 without gapping: 48531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54301
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23426109484
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
