Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003430A_C01 KMC003430A_c01
(733 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM61449.1| unknown [Arabidopsis thaliana] 172 6e-42
ref|NP_565370.1| expressed protein; protein id: At2g15240.1, sup... 172 6e-42
pir||F84526 hypothetical protein At2g15240 [imported] - Arabidop... 138 9e-32
ref|NP_596353.1| hypothetical protein [Schizosaccharomyces pombe... 76 4e-13
ref|NP_499279.1| Putative membrane protein, with at least 4 tran... 67 2e-10
>gb|AAM61449.1| unknown [Arabidopsis thaliana]
Length = 252
Score = 172 bits (435), Expect = 6e-42
Identities = 80/91 (87%), Positives = 89/91 (96%)
Frame = -1
Query: 733 FVLLYVIHYFLSPLLVAHGFIPTLLSNILVMVGASYYHYLNFLGYDVLPFLERTTFFLYP 554
FVLLYV+HYFLSPLL+AHGFIP LLSN+L MVGASYYHYLNFLGYDVLPFLERTTFFLYP
Sbjct: 162 FVLLYVVHYFLSPLLIAHGFIPLLLSNLLFMVGASYYHYLNFLGYDVLPFLERTTFFLYP 221
Query: 553 IGVVIVLSPILILSGFNPSRYFLSVYFSRQI 461
IGVVIVLSPILILSGFNPSRYF+++YFS+++
Sbjct: 222 IGVVIVLSPILILSGFNPSRYFMNMYFSQRL 252
>ref|NP_565370.1| expressed protein; protein id: At2g15240.1, supported by cDNA:
120231., supported by cDNA: gi_14190388, supported by
cDNA: gi_15450544 [Arabidopsis thaliana]
gi|14190389|gb|AAK55675.1|AF378872_1 At2g15240/F15A23.2
[Arabidopsis thaliana] gi|15450545|gb|AAK96450.1|
At2g15240/F15A23.2 [Arabidopsis thaliana]
gi|20197743|gb|AAD25568.2| expressed protein
[Arabidopsis thaliana]
Length = 252
Score = 172 bits (435), Expect = 6e-42
Identities = 80/91 (87%), Positives = 89/91 (96%)
Frame = -1
Query: 733 FVLLYVIHYFLSPLLVAHGFIPTLLSNILVMVGASYYHYLNFLGYDVLPFLERTTFFLYP 554
FVLLYV+HYFLSPLL+AHGFIP LLSN+L MVGASYYHYLNFLGYDVLPFLERTTFFLYP
Sbjct: 162 FVLLYVVHYFLSPLLIAHGFIPLLLSNLLFMVGASYYHYLNFLGYDVLPFLERTTFFLYP 221
Query: 553 IGVVIVLSPILILSGFNPSRYFLSVYFSRQI 461
IGVVIVLSPILILSGFNPSRYF+++YFS+++
Sbjct: 222 IGVVIVLSPILILSGFNPSRYFMNMYFSQRL 252
>pir||F84526 hypothetical protein At2g15240 [imported] - Arabidopsis thaliana
Length = 323
Score = 138 bits (347), Expect = 9e-32
Identities = 65/70 (92%), Positives = 68/70 (96%)
Frame = -1
Query: 733 FVLLYVIHYFLSPLLVAHGFIPTLLSNILVMVGASYYHYLNFLGYDVLPFLERTTFFLYP 554
FVLLYV+HYFLSPLL+AHGFIP LLSN+L MVGASYYHYLNFLGYDVLPFLERTTFFLYP
Sbjct: 162 FVLLYVVHYFLSPLLIAHGFIPLLLSNLLFMVGASYYHYLNFLGYDVLPFLERTTFFLYP 221
Query: 553 IGVVIVLSPI 524
IGVVIVLSPI
Sbjct: 222 IGVVIVLSPI 231
>ref|NP_596353.1| hypothetical protein [Schizosaccharomyces pombe]
gi|7491538|pir||T40009 hypothetical protein SPBC25H2.14
- fission yeast (Schizosaccharomyces pombe)
gi|2104463|emb|CAB08773.1| hypothetical protein; yeast
homolog YKR030W is possibly involved in vesicular
transport and membrane fusion by 2-hybrid data
[Schizosaccharomyces pombe]
Length = 235
Score = 76.3 bits (186), Expect = 4e-13
Identities = 37/89 (41%), Positives = 53/89 (58%)
Frame = -1
Query: 733 FVLLYVIHYFLSPLLVAHGFIPTLLSNILVMVGASYYHYLNFLGYDVLPFLERTTFFLYP 554
FVLLYVI FL P++ FI + N L +V YY YL F+GY +LPFL+ T L P
Sbjct: 146 FVLLYVIQLFLLPVITRDNFISLFMGNTLYLVALCYYSYLTFIGYQILPFLKNTHALLLP 205
Query: 553 IGVVIVLSPILILSGFNPSRYFLSVYFSR 467
I + ++ + +L GFN ++ + VYF +
Sbjct: 206 IPMFFIMWALSLL-GFNVPKHVVDVYFGK 233
>ref|NP_499279.1| Putative membrane protein, with at least 4 transmembrane domains,
of eukaryotic origin [Caenorhabditis elegans]
gi|1731144|sp|Q10045|YRT2_CAEEL HYPOTHETICAL 28.6 KD
PROTEIN T07A5.2 IN CHROMOSOME III gi|7507336|pir||T24631
hypothetical protein T07A5.2 - Caenorhabditis elegans
gi|3879519|emb|CAA88132.1| Hypothetical protein T07A5.2
[Caenorhabditis elegans]
Length = 244
Score = 67.4 bits (163), Expect = 2e-10
Identities = 36/89 (40%), Positives = 50/89 (55%), Gaps = 1/89 (1%)
Frame = -1
Query: 730 VLLYVIHYFLSPLLV-AHGFIPTLLSNILVMVGASYYHYLNFLGYDVLPFLERTTFFLYP 554
+LL+VI L P L+ + F+ LL N + A YY Y+ FLGY LP L +T +FLYP
Sbjct: 143 ILLHVIVPILYPTLIDSPAFLSILLGNTFWFLAACYYVYITFLGYTALPILHKTQYFLYP 202
Query: 553 IGVVIVLSPILILSGFNPSRYFLSVYFSR 467
I + + + G+N SR L+ Y SR
Sbjct: 203 ISFIFMFFVATLTGGWNISRTALNFYHSR 231
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 616,921,899
Number of Sequences: 1393205
Number of extensions: 12904038
Number of successful extensions: 31583
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 30688
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31573
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 34625071581
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
