Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003429A_C01 KMC003429A_c01
(379 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB63262.1| CIG2 [Nicotiana tabacum] 67 7e-11
dbj|BAB21393.1| IDI2 [Hordeum vulgare subsp. vulgare] 64 6e-10
gb|AAM65143.1| putative translation initiation factor eIF-2B alp... 59 1e-08
ref|NP_027726.1| putative translation initiation factor eIF-2B a... 59 1e-08
gb|AAM20446.1| putative translation initiation factor eIF-2B alp... 59 1e-08
>dbj|BAB63262.1| CIG2 [Nicotiana tabacum]
Length = 374
Score = 66.6 bits (161), Expect = 7e-11
Identities = 32/42 (76%), Positives = 36/42 (85%)
Frame = -2
Query: 378 VWNPAFDVTPANIISGIITEKGVITKSSAADAFDIKAFIQKT 253
VWNPAFDVTPAN+ISGIITEKGVITK A+ FDI F++KT
Sbjct: 330 VWNPAFDVTPANLISGIITEKGVITK-KGAETFDIAEFVRKT 370
>dbj|BAB21393.1| IDI2 [Hordeum vulgare subsp. vulgare]
Length = 367
Score = 63.5 bits (153), Expect = 6e-10
Identities = 29/40 (72%), Positives = 34/40 (84%)
Frame = -2
Query: 378 VWNPAFDVTPANIISGIITEKGVITKSSAADAFDIKAFIQ 259
VWNPAFDVTPA++I+ IITEKGVITKS FDIK+FI+
Sbjct: 325 VWNPAFDVTPADLITAIITEKGVITKSDPDGTFDIKSFIE 364
>gb|AAM65143.1| putative translation initiation factor eIF-2B alpha subunit
[Arabidopsis thaliana]
Length = 374
Score = 59.3 bits (142), Expect = 1e-08
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = -2
Query: 378 VWNPAFDVTPANIISGIITEKGVITKSSAADAFDIKAFIQK 256
VWNPAFD+TPA +I+GIITEKGVITK + D FDI +F +K
Sbjct: 328 VWNPAFDMTPAELIAGIITEKGVITK-NGNDTFDISSFAKK 367
>ref|NP_027726.1| putative translation initiation factor eIF-2B alpha subunit;
protein id: At2g05830.1, supported by cDNA: 36965.
[Arabidopsis thaliana] gi|20197503|gb|AAC95160.2|
putative translation initiation factor eIF-2B alpha
subunit [Arabidopsis thaliana]
Length = 374
Score = 59.3 bits (142), Expect = 1e-08
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = -2
Query: 378 VWNPAFDVTPANIISGIITEKGVITKSSAADAFDIKAFIQK 256
VWNPAFD+TPA +I+GIITEKGVITK + D FDI +F +K
Sbjct: 328 VWNPAFDMTPAELIAGIITEKGVITK-NGNDTFDISSFAKK 367
>gb|AAM20446.1| putative translation initiation factor eIF-2B alpha subunit
[Arabidopsis thaliana] gi|22136322|gb|AAM91239.1|
putative translation initiation factor eIF-2B alpha
subunit [Arabidopsis thaliana]
Length = 326
Score = 59.3 bits (142), Expect = 1e-08
Identities = 28/41 (68%), Positives = 34/41 (82%)
Frame = -2
Query: 378 VWNPAFDVTPANIISGIITEKGVITKSSAADAFDIKAFIQK 256
VWNPAFD+TPA +I+GIITEKGVITK + D FDI +F +K
Sbjct: 280 VWNPAFDMTPAELIAGIITEKGVITK-NGNDTFDISSFAKK 319
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 302,392,668
Number of Sequences: 1393205
Number of extensions: 5475347
Number of successful extensions: 12461
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 12355
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 12461
length of database: 448,689,247
effective HSP length: 101
effective length of database: 307,975,542
effective search space used: 7391413008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
