Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003428A_C01 KMC003428A_c01
(654 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAC41010.2| Mob1-like protein [Medicago sativa subsp. falcata] 290 1e-77
ref|NP_199368.1| putative protein; protein id: At5g45550.1, supp... 264 9e-70
dbj|BAC42011.1| unknown protein [Arabidopsis thaliana] 261 8e-69
ref|NP_193640.1| putative protein; protein id: At4g19050.1 [Arab... 261 8e-69
emb|CAC12986.1| hypothetical protein [Cicer arietinum] 260 1e-68
>emb|CAC41010.2| Mob1-like protein [Medicago sativa subsp. falcata]
Length = 215
Score = 290 bits (742), Expect = 1e-77
Identities = 136/141 (96%), Positives = 140/141 (98%)
Frame = -3
Query: 652 TLTEFCTPSNCPSMTAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIESQLDDETIFP 473
TLTEFCTPSNCP+MTAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIESQLDDETIFP
Sbjct: 75 TLTEFCTPSNCPTMTAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIESQLDDETIFP 134
Query: 472 QKLGAPFPPXFRDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFVLFTWEF 293
Q+LGAPFPP FRDVVKTIFKRLFRVYAH+YHSHFQKIVSLKEEAHLNTCFKHFVLFTWEF
Sbjct: 135 QRLGAPFPPNFRDVVKTIFKRLFRVYAHVYHSHFQKIVSLKEEAHLNTCFKHFVLFTWEF 194
Query: 292 RLIDKAELAPLEDLVDSIIQL 230
RLI+KAELAPLEDLVDSIIQL
Sbjct: 195 RLIEKAELAPLEDLVDSIIQL 215
>ref|NP_199368.1| putative protein; protein id: At5g45550.1, supported by cDNA:
27099., supported by cDNA: gi_15028014 [Arabidopsis
thaliana] gi|9758745|dbj|BAB09183.1|
gene_id:MFC19.22~pir||T04426~similar to unknown protein
[Arabidopsis thaliana] gi|15028015|gb|AAK76538.1|
unknown protein [Arabidopsis thaliana]
gi|21436065|gb|AAM51233.1| unknown protein [Arabidopsis
thaliana] gi|21555122|gb|AAM63781.1| Mob1-like protein
[Arabidopsis thaliana]
Length = 215
Score = 264 bits (674), Expect = 9e-70
Identities = 122/139 (87%), Positives = 132/139 (94%)
Frame = -3
Query: 652 TLTEFCTPSNCPSMTAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIESQLDDETIFP 473
TLTEFCTP NCP+MTAGPKYEYRWADGV IKKPIEVSAPKYVEYLMDWIE+QLDDET+FP
Sbjct: 74 TLTEFCTPDNCPTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQLDDETLFP 133
Query: 472 QKLGAPFPPXFRDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFVLFTWEF 293
Q+LGAPFP F+DVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHF+LFT EF
Sbjct: 134 QRLGAPFPQNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTHEF 193
Query: 292 RLIDKAELAPLEDLVDSII 236
LIDK ELAPL++L++SII
Sbjct: 194 GLIDKKELAPLQELIESII 212
>dbj|BAC42011.1| unknown protein [Arabidopsis thaliana]
Length = 215
Score = 261 bits (666), Expect = 8e-69
Identities = 122/139 (87%), Positives = 131/139 (93%)
Frame = -3
Query: 652 TLTEFCTPSNCPSMTAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIESQLDDETIFP 473
TLTEFCTP NC +MTAGPKYEYRWADGV IKKPIEVSAPKYVEYLMDWIE+QLDDETIFP
Sbjct: 74 TLTEFCTPENCSTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQLDDETIFP 133
Query: 472 QKLGAPFPPXFRDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFVLFTWEF 293
QKLGA FPP F++VVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHF+LFT EF
Sbjct: 134 QKLGAAFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTHEF 193
Query: 292 RLIDKAELAPLEDLVDSII 236
LIDK ELAPL++L++SII
Sbjct: 194 VLIDKKELAPLQELIESII 212
>ref|NP_193640.1| putative protein; protein id: At4g19050.1 [Arabidopsis thaliana]
gi|7487137|pir||T04426 hypothetical protein T18B16.20 -
Arabidopsis thaliana gi|2832633|emb|CAA16762.1| putative
protein [Arabidopsis thaliana] gi|7268700|emb|CAB78907.1|
putative protein [Arabidopsis thaliana]
Length = 1405
Score = 261 bits (666), Expect = 8e-69
Identities = 122/139 (87%), Positives = 131/139 (93%)
Frame = -3
Query: 652 TLTEFCTPSNCPSMTAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIESQLDDETIFP 473
TLTEFCTP NC +MTAGPKYEYRWADGV IKKPIEVSAPKYVEYLMDWIE+QLDDETIFP
Sbjct: 1264 TLTEFCTPENCSTMTAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIETQLDDETIFP 1323
Query: 472 QKLGAPFPPXFRDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFVLFTWEF 293
QKLGA FPP F++VVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHF+LFT EF
Sbjct: 1324 QKLGAAFPPNFKEVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTHEF 1383
Query: 292 RLIDKAELAPLEDLVDSII 236
LIDK ELAPL++L++SII
Sbjct: 1384 VLIDKKELAPLQELIESII 1402
>emb|CAC12986.1| hypothetical protein [Cicer arietinum]
Length = 191
Score = 260 bits (664), Expect = 1e-68
Identities = 120/139 (86%), Positives = 132/139 (94%)
Frame = -3
Query: 652 TLTEFCTPSNCPSMTAGPKYEYRWADGVTIKKPIEVSAPKYVEYLMDWIESQLDDETIFP 473
TLTEFCTP NC +M+AGPKYEYRWADGV IKKPIEVSAPKYVEYLMDWIESQLDDE+IFP
Sbjct: 52 TLTEFCTPENCRTMSAGPKYEYRWADGVQIKKPIEVSAPKYVEYLMDWIESQLDDESIFP 111
Query: 472 QKLGAPFPPXFRDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFVLFTWEF 293
Q+LG+PFPP F+DVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHF+LFT EF
Sbjct: 112 QRLGSPFPPNFKDVVKTIFKRLFRVYAHIYHSHFQKIVSLKEEAHLNTCFKHFILFTCEF 171
Query: 292 RLIDKAELAPLEDLVDSII 236
LIDK ELAPL++L+++II
Sbjct: 172 GLIDKKELAPLQELIETII 190
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 531,744,485
Number of Sequences: 1393205
Number of extensions: 11224991
Number of successful extensions: 46012
Number of sequences better than 10.0: 89
Number of HSP's better than 10.0 without gapping: 45190
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45971
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 28144814643
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
