Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003427A_C01 KMC003427A_c01
(416 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||H86301 hypothetical protein F19K19.4 [imported] - Arabidops... 50 7e-06
ref|NP_564003.1| receptor-like serine/threonine kinase, putative... 50 7e-06
gb|AAF06016.1|AF194171_1 putative serine/threonine kinase [Horde... 38 0.034
ref|NP_496263.1| Putative nuclear protein, with 2 coiled coil-4 ... 34 0.49
gb|AAL58470.1|AF459093_1 serine-threonine rich antigen [Staphylo... 32 1.4
>pir||H86301 hypothetical protein F19K19.4 [imported] - Arabidopsis thaliana
gi|9989053|gb|AAG10816.1|AC011808_4 Unknown protein
[Arabidopsis thaliana]
Length = 396
Score = 50.1 bits (118), Expect = 7e-06
Identities = 28/69 (40%), Positives = 38/69 (54%), Gaps = 8/69 (11%)
Frame = -1
Query: 413 DVDESKITKPGLISDVMDLKIRQPKGNKD--------TKTSSSFNSSSASDSQGTMKSLA 258
D+D KI++PGLISD MDLK+R P K T SSS N SS S +
Sbjct: 325 DIDYKKISRPGLISDFMDLKVRGPVATKTEQVNRQNYTNPSSSSNGSSRDHSNAYSSGAS 384
Query: 257 ASSAASTFT 231
+++A +TF+
Sbjct: 385 SANAGNTFS 393
>ref|NP_564003.1| receptor-like serine/threonine kinase, putative; protein id:
At1g16670.1, supported by cDNA: gi_16649102 [Arabidopsis
thaliana] gi|16649103|gb|AAL24403.1| Unknown protein
[Arabidopsis thaliana] gi|23197888|gb|AAN15471.1|
Unknown protein [Arabidopsis thaliana]
Length = 390
Score = 50.1 bits (118), Expect = 7e-06
Identities = 28/69 (40%), Positives = 38/69 (54%), Gaps = 8/69 (11%)
Frame = -1
Query: 413 DVDESKITKPGLISDVMDLKIRQPKGNKD--------TKTSSSFNSSSASDSQGTMKSLA 258
D+D KI++PGLISD MDLK+R P K T SSS N SS S +
Sbjct: 319 DIDYKKISRPGLISDFMDLKVRGPVATKTEQVNRQNYTNPSSSSNGSSRDHSNAYSSGAS 378
Query: 257 ASSAASTFT 231
+++A +TF+
Sbjct: 379 SANAGNTFS 387
>gb|AAF06016.1|AF194171_1 putative serine/threonine kinase [Hordeum vulgare]
Length = 168
Score = 37.7 bits (86), Expect = 0.034
Identities = 25/62 (40%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = -1
Query: 413 DVDESKITKPGLISDVMDLKIR-QPKGNKDTKTSSSFNSSSASDSQGTMKSLAASSAAST 237
DV+ KI+KP ISD MDLKIR + N SSS S+ + S + A+ T
Sbjct: 101 DVESEKISKPATISDFMDLKIRSMRRENNIAFASSSTLLSTIMAHSSPLLSQETTQASIT 160
Query: 236 FT 231
FT
Sbjct: 161 FT 162
>ref|NP_496263.1| Putative nuclear protein, with 2 coiled coil-4 domains, nematode
specific [Caenorhabditis elegans]
gi|2496975|sp|Q09950|YSR2_CAEEL HYPOTHETICAL 54.6 KD
PROTEIN F59B10.2 IN CHROMOSOME II gi|7504736|pir||T22981
hypothetical protein F59B10.2 - Caenorhabditis elegans
gi|3877936|emb|CAA88601.1| Hypothetical protein F59B10.2
[Caenorhabditis elegans]
Length = 482
Score = 33.9 bits (76), Expect = 0.49
Identities = 24/66 (36%), Positives = 33/66 (49%)
Frame = -1
Query: 410 VDESKITKPGLISDVMDLKIRQPKGNKDTKTSSSFNSSSASDSQGTMKSLAASSAASTFT 231
V E KI KP V + K R+ K T T SSF SSS S S + + SS++++ +
Sbjct: 186 VVEKKIEKPA----VKEQKARKKKEKTPTPTESSFESSSDSSSTSESSTSSESSSSASES 241
Query: 230 VKYDKS 213
KS
Sbjct: 242 ESESKS 247
>gb|AAL58470.1|AF459093_1 serine-threonine rich antigen [Staphylococcus aureus]
Length = 2283
Score = 32.3 bits (72), Expect = 1.4
Identities = 17/54 (31%), Positives = 29/54 (53%)
Frame = -1
Query: 380 LISDVMDLKIRQPKGNKDTKTSSSFNSSSASDSQGTMKSLAASSAASTFTVKYD 219
++S+ + + ++ + S S+S SDSQ T +S +AS +AST T D
Sbjct: 1566 IVSESVSESTSESGSTSESTSESDSTSTSLSDSQSTSRSTSASGSASTSTSTSD 1619
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 330,713,165
Number of Sequences: 1393205
Number of extensions: 6181426
Number of successful extensions: 23304
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 15986
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20856
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 6956733048
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
