KMC003425A_c01
[Fasta Sequence]   [Nr Search]   [EST assemble image]  

Fasta Sequence
>KMC003425A_C01 KMC003425A_c01
gAACAGCCACAAACTTAGTGAAGTTTTATTGAAGCACTGCATTCTAGTTGTAGTGTGTAC
GAAAGCACAACATACCGCAAACTAAAATGCGGTAGTTTAATGTACAACAATCGGTGTAAT
ACAACAAATCAGTTAGCGAGTAAGAAAATACACAAGATGGATAGAAAATTCAACATCATA
GCCGATTTAAACATTGTAGATGGGATTGAAATTTACCATAAATAATTATACAATTCAGGC
TTCCCTCACTGATACAAACACTCATTGATTGCTAATTTCGGTCAAACTGAGTCATCAGAT
TCATCAGAGTCACTCCTATCAGGATCCCCTGCATTTGTAAGAGTCTCCGGAGCATCATGC
TTTGGTTCAGGTGTAGGTGCAGTTTTTTTATTAGCACCTCGCACATTCTCATCCCCTTCT
TGCTCAGCTGCTACCACATCAAAACTGTCAGCTGTTCCTCCTGCCATGATTTTGAGAAGG
TCTTTCTCAACACGGGATACAAGCTCAGGATTAAGATCAGGTTCTCTGCGGAATCTACGC
TTGCGAGCATCTCTCATGGGAGGGGTAAGGCCATGCCTGTACTCAATCTCATCTGGAGCA
GCATCACCAGATTCCCTCACCATAATCATCtgaccaatatcagcactcttaatcaaagag
ttgtcatcataagtcttgtatgattcaacgacacagaggtctaataaaga


Nr search

BLASTX 2.2.2 [Dec-14-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= KMC003425A_C01 KMC003425A_c01
         (710 letters)

Database: nr 
           1,393,205 sequences; 448,689,247 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

ref|NP_175926.1| Serine/arginine-rich protein, putative; protein...   171  7e-42
dbj|BAC00616.1| OJ1316_H05.12 [Oryza sativa (japonica cultivar-g...   107  1e-22
ref|NP_499647.1| TBP-Associated transcription Factor family TAF-...    60  2e-08
gb|EAA09978.1| agCP11819 [Anopheles gambiae str. PEST]                 58  1e-07
gb|EAA34629.1| hypothetical protein [Neurospora crassa]                57  3e-07

>ref|NP_175926.1| Serine/arginine-rich protein, putative; protein id: At1g55300.1
           [Arabidopsis thaliana] gi|25405812|pir||A96595
           hypothetical protein F7A10.3 [imported] - Arabidopsis
           thaliana gi|12323163|gb|AAG51559.1|AC027034_5
           Serine/arginine-rich protein, putative; 48931-50251
           [Arabidopsis thaliana]
          Length = 203

 Score =  171 bits (434), Expect = 7e-42
 Identities = 92/149 (61%), Positives = 116/149 (77%), Gaps = 7/149 (4%)
 Frame = -1

Query: 710 SLLDL-CVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRR 534
           SLLDL  VVES+KTYDD +L+K+ADIGQMIMVRE GD AP+ +EYRHGLTPPM+DARKRR
Sbjct: 56  SLLDLPAVVESFKTYDDCALVKTADIGQMIMVREPGDPAPNTVEYRHGLTPPMKDARKRR 115

Query: 533 FRREPDLNPELVSRVEKDLLKIMAGGTADSFDVVAAEQEGDENVRGANKK---TAPTPEP 363
           FRREPDLNPELV RVE+DLL I++GGT ++      E   +EN   A+KK   ++PTP  
Sbjct: 116 FRREPDLNPELVQRVERDLLNILSGGTVENVH-EQEEPATNENASNASKKVSSSSPTPVE 174

Query: 362 KHDAPETLTN---AGDPDRSDSDESDDSV 285
           K +APET T+     +P+RS+S++SDDS+
Sbjct: 175 KPEAPETGTSNPTGVEPERSESEDSDDSM 203

>dbj|BAC00616.1| OJ1316_H05.12 [Oryza sativa (japonica cultivar-group)]
          Length = 440

 Score =  107 bits (268), Expect = 1e-22
 Identities = 54/68 (79%), Positives = 60/68 (87%), Gaps = 1/68 (1%)
 Frame = -1

Query: 710 SLLDL-CVVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIEYRHGLTPPMRDARKRR 534
           SLLDL  V+ESYKTY+D+ LIK+ADIGQMIMVRE  D AP+ IEY HGLTPPMRDAR+RR
Sbjct: 334 SLLDLPTVMESYKTYNDSVLIKTADIGQMIMVREEDDPAPEGIEYTHGLTPPMRDARRRR 393

Query: 533 FRREPDLN 510
           FRREPDLN
Sbjct: 394 FRREPDLN 401

>ref|NP_499647.1| TBP-Associated transcription Factor family TAF-7.2 (26.4 kD)
           (taf-7.2) [Caenorhabditis elegans]
           gi|13548468|emb|CAC35845.1| C. elegans TAF-7.2 protein
           (corresponding sequence Y111B2A.16) [Caenorhabditis
           elegans]
          Length = 236

 Score = 60.5 bits (145), Expect = 2e-08
 Identities = 48/160 (30%), Positives = 78/160 (48%), Gaps = 21/160 (13%)
 Frame = -1

Query: 707 LLDL-CVVESYKTYDDNSLIKSADIGQMIM----------------VRESGDAAPDEIEY 579
           +LDL  + E +KT D+ SL K AD+ Q+++                 +++  A   + +Y
Sbjct: 88  ILDLPTITEIHKTLDNKSLYKVADVSQILVCTHDSINSIASSSEDAAQKAAAAKAKQWQY 147

Query: 578 RHGLTPPMRDARKRRFRREPDLNPELVSRVEKDLLKIM-AGGTADS--FDVVAAEQEG-D 411
            HGLTPPM+ ARK+RFR+           VEK+L +++ A   ADS  +++V   +EG  
Sbjct: 148 PHGLTPPMKSARKKRFRKTKKKKFMDAPEVEKELKRLLRADLEADSVKWEIVEGNKEGAT 207

Query: 410 ENVRGANKKTAPTPEPKHDAPETLTNAGDPDRSDSDESDD 291
           + VR     T P+           ++  + D  D D+ DD
Sbjct: 208 DEVRTQRHVTYPS-----------SSEDESDVGDDDDKDD 236

>gb|EAA09978.1| agCP11819 [Anopheles gambiae str. PEST]
          Length = 431

 Score = 57.8 bits (138), Expect = 1e-07
 Identities = 45/178 (25%), Positives = 80/178 (44%), Gaps = 34/178 (19%)
 Frame = -1

Query: 692 VVESYKTYDDNSLIKSADIGQMIMVRESGDAAPDEIE------------------YRHGL 567
           ++ES KT D  +  K+ADI QM++ +E  +    E E                  + HG+
Sbjct: 90  IIESLKTIDSKNFYKTADICQMMICKEEPEQQSAEEESPNKNKKKDPNKVDKKFLWPHGV 149

Query: 566 TPPMRDARKRRFRREPDLN----PELVSRVEKDLLKIMAGGTADSFDVVAAEQEGDENVR 399
           TPP ++ RKRRFR+         PE+   V K LL++        ++++  +++ ++   
Sbjct: 150 TPPCKNIRKRRFRKTLKKKYVEAPEIEKEV-KRLLRVDNEAVNVKWELITEDEDPNKPSP 208

Query: 398 GANKKTAPTPEPKHDAPETLTNAGDPDR------------SDSDESDDSV*PKLAINE 261
           G+  +      P H +P   T  GD ++            SDSDE D+ +   + ++E
Sbjct: 209 GSGNEAG----PPHKSPSKNTKKGDHNKDVGEHDIFGEEVSDSDEEDNPINKNIDLDE 262

>gb|EAA34629.1| hypothetical protein [Neurospora crassa]
          Length = 563

 Score = 57.0 bits (136), Expect = 3e-07
 Identities = 49/151 (32%), Positives = 72/151 (47%), Gaps = 13/151 (8%)
 Frame = -1

Query: 707 LLDL-CVVESYKTYDDNSLIKSADIGQMIMV----RESGDAA----PDEIEYRH----GL 567
           L+DL  + E  KT+D  S++KSADI QMI+V    ++  +A     P  +E+ H    G+
Sbjct: 261 LVDLPTITEGMKTWDKKSMVKSADICQMILVFAKVKDEAEAKSVPLPKAVEHGHRWPHGI 320

Query: 566 TPPMRDARKRRFRREPDLNPELVSRVEKDLLKIMAGGTADSFDVVAAEQEGDENVRGANK 387
           TPPM DAR RRFR+   L+   +   E ++ +++A       D  A     +    G + 
Sbjct: 321 TPPMHDARNRRFRKR--LSKLEIQNKEAEVERLLAA------DREALNSRYELVAEGGHG 372

Query: 386 KTAPTPEPKHDAPETLTNAGDPDRSDSDESD 294
            TA        APE+    GD D     E D
Sbjct: 373 NTA--------APESDHEYGDEDGGMGGEED 395

  Database: nr
    Posted date:  Apr 1, 2003  2:05 AM
  Number of letters in database: 448,689,247
  Number of sequences in database:  1,393,205
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 

Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 552,840,850
Number of Sequences: 1393205
Number of extensions: 11572675
Number of successful extensions: 36499
Number of sequences better than 10.0: 68
Number of HSP's better than 10.0 without gapping: 34205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 36282
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 32654539052
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)


EST assemble image


clone accession position
1 SPD100c04_f BP051967 1 563
2 MF048c03_f BP030806 2 463
3 MWM106c11_f AV766446 2 401
4 SPD060h08_f BP048808 2 570
5 GNf067g05 BP072361 137 277
6 MFB067g06_f BP038886 155 713
7 GNf040a02 BP070274 158 495




Lotus japonicus
Kazusa DNA Research Institute