Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003422A_C01 KMC003422A_c01
(521 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62421.1|AF515795_1 Drm3 [Pisum sativum] 98 5e-20
gb|AAM62422.1|AF515796_1 Drm4 [Pisum sativum] 91 1e-17
gb|AAL50319.1| ultraviolet-B-inducible auxin-related protein [Pi... 86 2e-16
gb|AAB88876.1| putative auxin-repressed protein [Prunus armeniaca] 80 2e-14
ref|NP_564714.1| expressed protein; protein id: At1g56220.1, sup... 70 1e-11
>gb|AAM62421.1|AF515795_1 Drm3 [Pisum sativum]
Length = 124
Score = 98.2 bits (243), Expect = 5e-20
Identities = 48/62 (77%), Positives = 54/62 (86%)
Frame = -1
Query: 521 MIVKPPGYQINGSPPASPSGSTTPGSPFSGAREPFRFRRRSASDAYEERGQNRSSPPSPF 342
MIVKPPGYQ +GSPPASP+GS TP SPFSG RE FRFRRRSASDA+E++ Q+RSS SPF
Sbjct: 64 MIVKPPGYQ-SGSPPASPAGSVTPVSPFSGTRESFRFRRRSASDAFEKKNQDRSSSSSPF 122
Query: 341 DV 336
DV
Sbjct: 123 DV 124
>gb|AAM62422.1|AF515796_1 Drm4 [Pisum sativum]
Length = 129
Score = 90.5 bits (223), Expect = 1e-17
Identities = 49/66 (74%), Positives = 52/66 (78%), Gaps = 4/66 (6%)
Frame = -1
Query: 521 MIVKPPGYQI-NGSPPASPSGSTTPGSPFSGAREPFRFRRRSASDAYE---ERGQNRSSP 354
MIVKP GYQ +GS PASP+GST P SPFSGAREPFRFRRRS SDAYE + GQNR S
Sbjct: 64 MIVKPAGYQSPSGSAPASPAGSTPPLSPFSGAREPFRFRRRSISDAYESEVKTGQNRPSS 123
Query: 353 PSPFDV 336
SPFDV
Sbjct: 124 SSPFDV 129
>gb|AAL50319.1| ultraviolet-B-inducible auxin-related protein [Pisum sativum]
Length = 60
Score = 86.3 bits (212), Expect = 2e-16
Identities = 42/57 (73%), Positives = 48/57 (83%)
Frame = -1
Query: 506 PGYQINGSPPASPSGSTTPGSPFSGAREPFRFRRRSASDAYEERGQNRSSPPSPFDV 336
PGYQ +GSPPASP+GS TP SPFSG RE RFRRRSASDA+E++ Q+RSS SPFDV
Sbjct: 5 PGYQ-SGSPPASPAGSVTPVSPFSGTRESLRFRRRSASDAFEKKNQDRSSSSSPFDV 60
>gb|AAB88876.1| putative auxin-repressed protein [Prunus armeniaca]
Length = 133
Score = 79.7 bits (195), Expect = 2e-14
Identities = 45/69 (65%), Positives = 48/69 (69%), Gaps = 7/69 (10%)
Frame = -1
Query: 521 MIVKPPGYQI--NGSPPASPSGSTTPGSPFSGAREPFRFRRRSASDAYEERGQ-----NR 363
MIVKPPGY +GSPP SP+GST P SPFSG RFRRRSASDAYE+ Q R
Sbjct: 65 MIVKPPGYGSGNSGSPPISPAGSTPPVSPFSGGSSMGRFRRRSASDAYEKASQVGGGGAR 124
Query: 362 SSPPSPFDV 336
SSP SPFDV
Sbjct: 125 SSPRSPFDV 133
>ref|NP_564714.1| expressed protein; protein id: At1g56220.1, supported by cDNA:
22928. [Arabidopsis thaliana] gi|21592368|gb|AAM64319.1|
putative auxin-repressed protein [Arabidopsis thaliana]
Length = 137
Score = 70.5 bits (171), Expect = 1e-11
Identities = 40/70 (57%), Positives = 46/70 (65%), Gaps = 12/70 (17%)
Frame = -1
Query: 521 MIVKPPGYQINGSPPASPSGSTTPGSPFS-------GAREPFRFRRRSASDAYEERGQN- 366
MI+KPPGYQ S PASP+GST P SPFS G +EPFRFRRRS SDA+E+
Sbjct: 66 MIIKPPGYQ-GSSAPASPAGSTPPLSPFSPPLSPFSGGKEPFRFRRRSTSDAFEKAAGGS 124
Query: 365 ----RSSPPS 348
RSSPP+
Sbjct: 125 ETGPRSSPPT 134
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 445,045,057
Number of Sequences: 1393205
Number of extensions: 9598789
Number of successful extensions: 34438
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 29743
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34229
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 16731298976
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
