Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003421A_C02 KMC003421A_c02
(605 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_171802.1| unknown protein; protein id: At1g03030.1 [Arabi... 186 2e-46
pir||A86161 hypothetical protein F10O3.15 - Arabidopsis thaliana... 184 6e-46
ref|NP_592968.1| similarity to uridine kinase [Schizosaccharomyc... 82 4e-15
gb|EAA31719.1| hypothetical protein [Neurospora crassa] gi|28950... 78 8e-14
emb|CAD55275.1| conserved hypothetical protein [Streptomyces coe... 71 1e-11
>ref|NP_171802.1| unknown protein; protein id: At1g03030.1 [Arabidopsis thaliana]
Length = 333
Score = 186 bits (472), Expect = 2e-46
Identities = 87/110 (79%), Positives = 101/110 (91%)
Frame = -1
Query: 605 SVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEGNYLLLEDGVWKEISSLFDEKWFIDINID 426
SVYVPSFDHGVGDPVEDDIFV+LQHKVVIVEGNY+LLE+G WK+IS +FDEKWFID+N+D
Sbjct: 223 SVYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLEEGSWKDISDMFDEKWFIDVNLD 282
Query: 425 KAMQRVLKRHISTGKPPDIAKQRVENNDRLNAELIMKSKKNADLIIKSVD 276
AMQRV RHISTGKPPD+AK RV+ NDR NAELI+KSK NADL+I+S++
Sbjct: 283 TAMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKSKTNADLLIRSMN 332
>pir||A86161 hypothetical protein F10O3.15 - Arabidopsis thaliana
gi|4587575|gb|AAD25806.1|AC006550_14 Belongs to PF|01121
Uncharacterized protein family UPF0038 containing
ATP/GTP binding domain. ESTs gb|AA585719, gb|AA728503
and gb|T22272 come from this gene. [Arabidopsis
thaliana]
Length = 270
Score = 184 bits (468), Expect = 6e-46
Identities = 86/109 (78%), Positives = 100/109 (90%)
Frame = -1
Query: 602 VYVPSFDHGVGDPVEDDIFVNLQHKVVIVEGNYLLLEDGVWKEISSLFDEKWFIDINIDK 423
VYVPSFDHGVGDPVEDDIFV+LQHKVVIVEGNY+LLE+G WK+IS +FDEKWFID+N+D
Sbjct: 161 VYVPSFDHGVGDPVEDDIFVSLQHKVVIVEGNYILLEEGSWKDISDMFDEKWFIDVNLDT 220
Query: 422 AMQRVLKRHISTGKPPDIAKQRVENNDRLNAELIMKSKKNADLIIKSVD 276
AMQRV RHISTGKPPD+AK RV+ NDR NAELI+KSK NADL+I+S++
Sbjct: 221 AMQRVENRHISTGKPPDVAKWRVDYNDRPNAELIIKSKTNADLLIRSMN 269
>ref|NP_592968.1| similarity to uridine kinase [Schizosaccharomyces pombe]
gi|11289167|pir||T50170 hypothetical protein SPAC227.14
[imported] - fission yeast (Schizosaccharomyces pombe)
gi|6455917|emb|CAB61463.1| similarity to uridine kinase
[Schizosaccharomyces pombe]
Length = 235
Score = 82.4 bits (202), Expect = 4e-15
Identities = 39/110 (35%), Positives = 64/110 (57%), Gaps = 2/110 (1%)
Frame = -1
Query: 602 VYVPSFDHGVGDPVEDDIFVNLQHKVVIVEGNYLLLEDGVWKEISSLFDEKWFIDINIDK 423
+Y PSFDH +GDPV DDI V +++++I EGNYLLL W + L+D K ++ +
Sbjct: 116 LYAPSFDHAIGDPVVDDICVEPKNRILIFEGNYLLLNKPPWSDACKLYDIKAYLPVEHSV 175
Query: 422 AMQRVLKRHISTG--KPPDIAKQRVENNDRLNAELIMKSKKNADLIIKSV 279
A RV RH+ +G + A +R + ND +N + K+ D++++ +
Sbjct: 176 ARARVAHRHLVSGLCATEEEAIERTDRNDMINLTFVEKNMVTPDIVLQQL 225
>gb|EAA31719.1| hypothetical protein [Neurospora crassa]
gi|28950170|emb|CAD71038.1| conserved hypothetical
protein [Neurospora crassa]
Length = 244
Score = 78.2 bits (191), Expect = 8e-14
Identities = 41/114 (35%), Positives = 68/114 (58%), Gaps = 4/114 (3%)
Frame = -1
Query: 605 SVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEGNYLLLEDGVWKEISSLFDEKWFIDINID 426
+V+ PSFDH + DPVE I V + +VV+ EGNYLLL+ W + + L D K+F+ +
Sbjct: 124 TVWAPSFDHALKDPVEKGIEVGPEMRVVVFEGNYLLLDQKPWSDAAKLMDLKFFVRVPFP 183
Query: 425 KAMQRVLKRHISTG--KPPDIAKQRVENNDRLNAELI--MKSKKNADLIIKSVD 276
A +R++KRH++ G + A +R ND +N LI + + D +++S++
Sbjct: 184 VARKRLVKRHLAAGIAATEEEADKRAVENDLVNGALIEELLREDEVDEVVESLE 237
>emb|CAD55275.1| conserved hypothetical protein [Streptomyces coelicolor A3(2)]
Length = 229
Score = 70.9 bits (172), Expect = 1e-11
Identities = 35/106 (33%), Positives = 57/106 (53%)
Frame = -1
Query: 605 SVYVPSFDHGVGDPVEDDIFVNLQHKVVIVEGNYLLLEDGVWKEISSLFDEKWFIDINID 426
+VY P F+ + P+ + V ++V+ EGNYLLLE G W + + DE WF
Sbjct: 103 TVYAPGFERELEQPIAGAVPVPPSVRLVVTEGNYLLLETGAWARVRARLDEVWFCGPAEP 162
Query: 425 KAMQRVLKRHISTGKPPDIAKQRVENNDRLNAELIMKSKKNADLII 288
+ ++R++ RH GK P A D+ NA+L+ ++ ADL++
Sbjct: 163 ERVRRLVARHERFGKSPAQAAAWALGPDQRNADLVAATRHRADLVV 208
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 502,423,722
Number of Sequences: 1393205
Number of extensions: 10480303
Number of successful extensions: 22787
Number of sequences better than 10.0: 38
Number of HSP's better than 10.0 without gapping: 22073
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22779
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23997478008
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
