Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003420A_C01 KMC003420A_c01
(645 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF99798.1|AC012463_15 T2E6.19 [Arabidopsis thaliana] 155 6e-37
ref|NP_564513.1| expressed protein; protein id: At1g47740.1, sup... 155 6e-37
gb|AAM65611.1| unknown [Arabidopsis thaliana] 153 2e-36
ref|NP_565588.1| expressed protein; protein id: At2g25190.1, sup... 74 2e-12
ref|NP_565243.1| expressed protein; protein id: At1g80690.1, sup... 70 2e-11
>gb|AAF99798.1|AC012463_15 T2E6.19 [Arabidopsis thaliana]
Length = 292
Score = 155 bits (391), Expect = 6e-37
Identities = 79/114 (69%), Positives = 95/114 (83%), Gaps = 4/114 (3%)
Frame = -2
Query: 641 HFCKDICFKLTGKSIPKWVNRLARLGSICNCILPEALKISAVGHDPDCQ--PRDSEKRRL 468
HFC+D+C+KLTGK IPKWVNRLA++GS+C+CILPE+LKI+AV HDPD Q ++EKR L
Sbjct: 183 HFCQDVCYKLTGKKIPKWVNRLAQIGSVCSCILPESLKITAVCHDPDGQIPEEENEKRSL 242
Query: 467 RNSFNSLSSISMRQKQLSKSSLFLQSPLRGCLSSSWPSWELR--KSINRSLKER 312
R+SF+ LSSISMRQKQLS SSLFLQSPLRGCL P W+L+ KS + SLKER
Sbjct: 243 RSSFSCLSSISMRQKQLSTSSLFLQSPLRGCL----PPWQLKRSKSNSSSLKER 292
>ref|NP_564513.1| expressed protein; protein id: At1g47740.1, supported by cDNA:
40816. [Arabidopsis thaliana] gi|19424079|gb|AAL87252.1|
unknown protein [Arabidopsis thaliana]
gi|21280795|gb|AAM45073.1| unknown protein [Arabidopsis
thaliana]
Length = 279
Score = 155 bits (391), Expect = 6e-37
Identities = 79/114 (69%), Positives = 95/114 (83%), Gaps = 4/114 (3%)
Frame = -2
Query: 641 HFCKDICFKLTGKSIPKWVNRLARLGSICNCILPEALKISAVGHDPDCQ--PRDSEKRRL 468
HFC+D+C+KLTGK IPKWVNRLA++GS+C+CILPE+LKI+AV HDPD Q ++EKR L
Sbjct: 170 HFCQDVCYKLTGKKIPKWVNRLAQIGSVCSCILPESLKITAVCHDPDGQIPEEENEKRSL 229
Query: 467 RNSFNSLSSISMRQKQLSKSSLFLQSPLRGCLSSSWPSWELR--KSINRSLKER 312
R+SF+ LSSISMRQKQLS SSLFLQSPLRGCL P W+L+ KS + SLKER
Sbjct: 230 RSSFSCLSSISMRQKQLSTSSLFLQSPLRGCL----PPWQLKRSKSNSSSLKER 279
>gb|AAM65611.1| unknown [Arabidopsis thaliana]
Length = 251
Score = 153 bits (387), Expect = 2e-36
Identities = 78/114 (68%), Positives = 95/114 (82%), Gaps = 4/114 (3%)
Frame = -2
Query: 641 HFCKDICFKLTGKSIPKWVNRLARLGSICNCILPEALKISAVGHDPDCQ--PRDSEKRRL 468
HFC+D+C+KLTGK IPKWVNRLA++GS+C+CILPE+LKI+AV HDPD Q ++EKR L
Sbjct: 142 HFCQDVCYKLTGKKIPKWVNRLAQIGSVCSCILPESLKITAVCHDPDGQIPEEENEKRSL 201
Query: 467 RNSFNSLSSISMRQKQLSKSSLFLQSPLRGCLSSSWPSWELR--KSINRSLKER 312
R+SF+ LSSIS+RQKQLS SSLFLQSPLRGCL P W+L+ KS + SLKER
Sbjct: 202 RSSFSCLSSISIRQKQLSTSSLFLQSPLRGCL----PPWQLKRSKSNSSSLKER 251
>ref|NP_565588.1| expressed protein; protein id: At2g25190.1, supported by cDNA:
14105., supported by cDNA: gi_13877550, supported by
cDNA: gi_20148724 [Arabidopsis thaliana]
gi|25354456|pir||D84645 hypothetical protein At2g25190
[imported] - Arabidopsis thaliana
gi|4567258|gb|AAD23672.1| expressed protein [Arabidopsis
thaliana] gi|13877551|gb|AAK43853.1|AF370476_1 Unknown
protein [Arabidopsis thaliana]
gi|20148725|gb|AAM10253.1| unknown protein [Arabidopsis
thaliana] gi|21553378|gb|AAM62471.1| unknown
[Arabidopsis thaliana]
Length = 240
Score = 73.6 bits (179), Expect = 2e-12
Identities = 33/64 (51%), Positives = 43/64 (66%)
Frame = -2
Query: 641 HFCKDICFKLTGKSIPKWVNRLARLGSICNCILPEALKISAVGHDPDCQPRDSEKRRLRN 462
HFC ++C KL KSIP+WVNRLARLG +CNC+LP L + V + +SEK++LRN
Sbjct: 118 HFCNEVCLKLAQKSIPRWVNRLARLGVLCNCVLPPRLNEAKVRRVGKGELSESEKKKLRN 177
Query: 461 SFNS 450
S
Sbjct: 178 RSRS 181
>ref|NP_565243.1| expressed protein; protein id: At1g80690.1, supported by cDNA:
40037. [Arabidopsis thaliana] gi|21593549|gb|AAM65516.1|
unknown [Arabidopsis thaliana]
Length = 227
Score = 70.1 bits (170), Expect = 2e-11
Identities = 43/110 (39%), Positives = 60/110 (54%)
Frame = -2
Query: 641 HFCKDICFKLTGKSIPKWVNRLARLGSICNCILPEALKISAVGHDPDCQPRDSEKRRLRN 462
HFC + C KLTG IP WVNRLAR+G +CNC+LP + + G++ Q + E N
Sbjct: 116 HFCDETCIKLTGNPIPSWVNRLARIGFMCNCVLPATINATRFGNNRVNQDKSCE---AEN 172
Query: 461 SFNSLSSISMRQKQLSKSSLFLQSPLRGCLSSSWPSWELRKSINRSLKER 312
L+S+S R+ +S++ S SSS PS ++R RS K R
Sbjct: 173 EKKKLTSVSSRE----RSTIATPSS-----SSSSPSVQVR---GRSRKRR 210
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 493,191,672
Number of Sequences: 1393205
Number of extensions: 10020424
Number of successful extensions: 34958
Number of sequences better than 10.0: 51
Number of HSP's better than 10.0 without gapping: 34041
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34949
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27291941472
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
