Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003419A_C01 KMC003419A_c01
(529 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG26105.1| NADH dehydrogenase subunit B [Ceratophyllum demer... 33 1.6
gb|AAG26114.1| NADH dehydrogenase subunit B [Drimys winteri] 32 4.6
gb|AAG44382.1| NADH dehydrogenase subunit B [Amborella trichopoda] 32 4.6
gb|AAG26096.1| NADH dehydrogenase subunit B [Asarum canadense] 32 4.6
gb|AAG26111.1| NADH dehydrogenase subunit B [Dioscorea bulbifera] 32 4.6
>gb|AAG26105.1| NADH dehydrogenase subunit B [Ceratophyllum demersum]
Length = 486
Score = 33.5 bits (75), Expect = 1.6
Identities = 23/43 (53%), Positives = 25/43 (57%), Gaps = 1/43 (2%)
Frame = -3
Query: 443 FSLCTAEVARKGFGYLLCWS*FILV-CILIFCLIFLLMIDSGS 318
F L + + K F LL FIL CILIF LI LLMIDS S
Sbjct: 10 FILDSTRIFMKAFHLLLFHGSFILPECILIFGLILLLMIDSTS 52
>gb|AAG26114.1| NADH dehydrogenase subunit B [Drimys winteri]
Length = 486
Score = 32.0 bits (71), Expect = 4.6
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 443 FSLCTAEVARKGFGYLLCWS*FILV-CILIFCLIFLLMIDSGS 318
F L + + K F LL FI CILIF LI LLMIDS S
Sbjct: 10 FILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTS 52
>gb|AAG44382.1| NADH dehydrogenase subunit B [Amborella trichopoda]
Length = 486
Score = 32.0 bits (71), Expect = 4.6
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 443 FSLCTAEVARKGFGYLLCWS*FILV-CILIFCLIFLLMIDSGS 318
F L + + K F LL FI CILIF LI LLMIDS S
Sbjct: 10 FILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTS 52
>gb|AAG26096.1| NADH dehydrogenase subunit B [Asarum canadense]
Length = 485
Score = 32.0 bits (71), Expect = 4.6
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 443 FSLCTAEVARKGFGYLLCWS*FILV-CILIFCLIFLLMIDSGS 318
F L + + K F LL FI CILIF LI LLMIDS S
Sbjct: 10 FILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTS 52
>gb|AAG26111.1| NADH dehydrogenase subunit B [Dioscorea bulbifera]
Length = 480
Score = 32.0 bits (71), Expect = 4.6
Identities = 22/43 (51%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Frame = -3
Query: 443 FSLCTAEVARKGFGYLLCWS*FILV-CILIFCLIFLLMIDSGS 318
F L + + K F LL FI CILIF LI LLMIDS S
Sbjct: 10 FILDSTRIFMKAFHLLLFHGSFIFPECILIFGLILLLMIDSTS 52
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 405,419,367
Number of Sequences: 1393205
Number of extensions: 7904395
Number of successful extensions: 20323
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 19879
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20298
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17308240320
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
