Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003418A_C02 KMC003418A_c02
(572 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T45896 hypothetical protein F4P12.260 - Arabidopsis thalian... 48 8e-05
ref|NP_566986.1| chloroplast lumen common protein family; protei... 48 8e-05
gb|AAM66986.1| unknown [Arabidopsis thaliana] 46 4e-04
ref|NP_565860.1| chloroplast lumen common protein family; protei... 46 4e-04
ref|NP_566595.1| putative MAP kinase; protein id: At3g18040.1, s... 32 4.3
>pir||T45896 hypothetical protein F4P12.260 - Arabidopsis thaliana
gi|6729507|emb|CAB67663.1| putative protein [Arabidopsis
thaliana]
Length = 388
Score = 48.1 bits (113), Expect = 8e-05
Identities = 20/29 (68%), Positives = 23/29 (78%)
Frame = -3
Query: 570 PKNHPYKEYFEDNMFATKFFSQNLEREGA 484
PKNHPY+EYF DNM ATK FS+ +RE A
Sbjct: 352 PKNHPYREYFMDNMIATKLFSEKAQREMA 380
>ref|NP_566986.1| chloroplast lumen common protein family; protein id: At3g53560.1,
supported by cDNA: 36212., supported by cDNA:
gi_20466551 [Arabidopsis thaliana]
gi|20466552|gb|AAM20593.1| putative protein [Arabidopsis
thaliana] gi|23198132|gb|AAN15593.1| putative protein
[Arabidopsis thaliana]
Length = 340
Score = 48.1 bits (113), Expect = 8e-05
Identities = 20/29 (68%), Positives = 23/29 (78%)
Frame = -3
Query: 570 PKNHPYKEYFEDNMFATKFFSQNLEREGA 484
PKNHPY+EYF DNM ATK FS+ +RE A
Sbjct: 304 PKNHPYREYFMDNMIATKLFSEKAQREMA 332
>gb|AAM66986.1| unknown [Arabidopsis thaliana]
Length = 333
Score = 45.8 bits (107), Expect = 4e-04
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3
Query: 570 PKNHPYKEYFEDNMFATKFFSQNLEREGA 484
PKNHPY+EYF DNM A+K F++ ++RE A
Sbjct: 304 PKNHPYREYFMDNMVASKLFAEKVQREMA 332
>ref|NP_565860.1| chloroplast lumen common protein family; protein id: At2g37400.1,
supported by cDNA: 9001. [Arabidopsis thaliana]
gi|25408548|pir||C84792 hypothetical protein At2g37400
[imported] - Arabidopsis thaliana
gi|4056493|gb|AAC98059.1| chloroplast lumen common
protein family [Arabidopsis thaliana]
Length = 333
Score = 45.8 bits (107), Expect = 4e-04
Identities = 18/29 (62%), Positives = 24/29 (82%)
Frame = -3
Query: 570 PKNHPYKEYFEDNMFATKFFSQNLEREGA 484
PKNHPY+EYF DNM A+K F++ ++RE A
Sbjct: 304 PKNHPYREYFMDNMVASKLFAEKVQREMA 332
>ref|NP_566595.1| putative MAP kinase; protein id: At3g18040.1, supported by cDNA:
gi_7106543 [Arabidopsis thaliana]
Length = 510
Score = 32.3 bits (72), Expect = 4.3
Identities = 16/43 (37%), Positives = 26/43 (60%)
Frame = +3
Query: 327 RKYLCLANIRLPSRKQMN*PDQVMLVNRSIAAFITSLQKPPES 455
R++ L R+P+ K+ N + NRSIA+ +T+L+ PP S
Sbjct: 405 RQHASLPRERVPAPKKENGSHNHDIENRSIASLVTTLESPPTS 447
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 452,667,861
Number of Sequences: 1393205
Number of extensions: 8965662
Number of successful extensions: 18233
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 17539
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18229
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21243732558
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
