Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003414A_C02 KMC003414A_c02
(586 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAN47008.1| urease accessory protein UreD [Glycine max] 149 3e-35
ref|NP_671923.1| similar to putative urease accessory protein; p... 89 3e-17
dbj|BAA25266.1| component A of hexaprenyl diphosphate synthase [... 32 5.9
>gb|AAN47008.1| urease accessory protein UreD [Glycine max]
Length = 293
Score = 149 bits (376), Expect = 3e-35
Identities = 69/89 (77%), Positives = 83/89 (92%)
Frame = -3
Query: 578 RYIQKLVQDNVKRIMSEKLQHPSAALNHQRDKADHFMTKPNFMASCSVFGPKKIGLLVRV 399
+Y+Q VQD+VK++MSE+LQHPSAA +HQRDKADHF+TKP+F+ASCS FGPKKIGLLVRV
Sbjct: 205 QYVQNRVQDHVKKVMSEQLQHPSAAWSHQRDKADHFITKPSFIASCSAFGPKKIGLLVRV 264
Query: 398 ASVTTKSVYKFLQHQLAPLEPIIGVSPYR 312
A+ TT+SVYKFL+HQLAPLEP+IGV PYR
Sbjct: 265 AAETTESVYKFLRHQLAPLEPMIGVPPYR 293
>ref|NP_671923.1| similar to putative urease accessory protein; protein id:
At2g35035.1 [Arabidopsis thaliana]
Length = 294
Score = 89.4 bits (220), Expect = 3e-17
Identities = 46/88 (52%), Positives = 66/88 (74%), Gaps = 2/88 (2%)
Frame = -3
Query: 572 IQKLVQDNVKRIMSEKLQHPSAALNHQRDKA--DHFMTKPNFMASCSVFGPKKIGLLVRV 399
IQK VQ+NVK +MSE+LQ ++ H+ + + + FM KP F+ASCS FGP+ G++VR+
Sbjct: 207 IQKQVQENVKNMMSEQLQLSYSSRRHKSESSSRNRFM-KPEFIASCSTFGPEGKGVVVRI 265
Query: 398 ASVTTKSVYKFLQHQLAPLEPIIGVSPY 315
AS +T+SVY FL+ QLA LEP++G +PY
Sbjct: 266 ASDSTESVYNFLRQQLAELEPVLGQAPY 293
>dbj|BAA25266.1| component A of hexaprenyl diphosphate synthase [Micrococcus luteus]
Length = 143
Score = 32.0 bits (71), Expect = 5.9
Identities = 14/29 (48%), Positives = 19/29 (65%)
Frame = +1
Query: 190 ITN*LHLHNLNLQLGCRFFFPYRNNDKTV 276
IT+ + LHN+N Q+ F PY NN+K V
Sbjct: 112 ITDEIALHNINKQIHYMFIQPYMNNEKVV 140
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 478,196,293
Number of Sequences: 1393205
Number of extensions: 9652759
Number of successful extensions: 17592
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 17191
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17553
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
