Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003411A_C01 KMC003411A_c01
(408 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||S46947 ribosomal protein L2 - evening primrose mitochondrio... 49 2e-05
gb|AAL48207.1|AF387186_1 ribosomal protein L2 [Lonicera sp. Palm... 47 7e-05
gb|AAL48208.1|AF387187_1 ribosomal protein L2 [Gossypium arboreum] 46 1e-04
gb|AAD03036.1| ribosomal protein large subunit 2 [Solanum tubero... 45 2e-04
gb|AAL48209.1|AF387188_1 ribosomal protein L2 [Ulmus thomasii] 45 3e-04
>pir||S46947 ribosomal protein L2 - evening primrose mitochondrion
gi|516394|emb|CAA56451.1| 70s mitochondrial ribosomal
protein L2 [Oenothera berteriana]
Length = 332
Score = 48.5 bits (114), Expect = 2e-05
Identities = 22/48 (45%), Positives = 32/48 (65%), Gaps = 10/48 (20%)
Frame = -2
Query: 407 PAFFAPRVKGEEE----------LEVRNWKRNTHVWAHRNQRKAAISW 294
PAFFAPR++ +E+ EVR W+ ++ +WAHR +RKAA+SW
Sbjct: 197 PAFFAPRMREDEDKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSW 244
>gb|AAL48207.1|AF387186_1 ribosomal protein L2 [Lonicera sp. Palmer 679]
Length = 228
Score = 46.6 bits (109), Expect = 7e-05
Identities = 22/47 (46%), Positives = 32/47 (67%), Gaps = 7/47 (14%)
Frame = -2
Query: 407 PAFFAPR----VKGEEEL---EVRNWKRNTHVWAHRNQRKAAISWHN 288
PAFFAPR V+G+ E+R W+ ++ +WAHR +RKAA+SW +
Sbjct: 145 PAFFAPRMREKVRGKNTFSLCEIRKWRTHSILWAHRIKRKAALSWQS 191
>gb|AAL48208.1|AF387187_1 ribosomal protein L2 [Gossypium arboreum]
Length = 270
Score = 45.8 bits (107), Expect = 1e-04
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Frame = -2
Query: 407 PAFFAPRVKGEEE-------LEVRNWKRNTHVWAHRNQRKAAISWHN 288
PAFFAPR++ + EVR W+ ++ +WAHR +RKAA+SW +
Sbjct: 188 PAFFAPRMREKLRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQS 234
>gb|AAD03036.1| ribosomal protein large subunit 2 [Solanum tuberosum]
Length = 296
Score = 45.1 bits (105), Expect = 2e-04
Identities = 21/47 (44%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Frame = -2
Query: 407 PAFFAPR----VKGEEEL---EVRNWKRNTHVWAHRNQRKAAISWHN 288
PAFFAPR V+G+ E+R W+ ++ +W HR +RKAA+SW +
Sbjct: 201 PAFFAPRMREKVRGKNTFSLCEIRKWRTHSILWVHRIKRKAALSWQS 247
>gb|AAL48209.1|AF387188_1 ribosomal protein L2 [Ulmus thomasii]
Length = 246
Score = 44.7 bits (104), Expect = 3e-04
Identities = 22/47 (46%), Positives = 31/47 (65%), Gaps = 7/47 (14%)
Frame = -2
Query: 407 PAFFAPR----VKGEEEL---EVRNWKRNTHVWAHRNQRKAAISWHN 288
PAF APR V+G+ EVR W+ ++ +WAHR +RKAA+SW +
Sbjct: 175 PAFLAPRMREKVRGKNTFSLCEVRKWRTHSILWAHRIKRKAALSWQS 221
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 330,491,585
Number of Sequences: 1393205
Number of extensions: 6447801
Number of successful extensions: 31170
Number of sequences better than 10.0: 48
Number of HSP's better than 10.0 without gapping: 26242
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30656
length of database: 448,689,247
effective HSP length: 111
effective length of database: 294,043,492
effective search space used: 7057043808
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
