Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003409A_C01 KMC003409A_c01
(453 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabido... 44 6e-04
gb|EAA33724.1| hypothetical protein [Neurospora crassa] 37 0.12
emb|CAA28903.1| fibrillarin [Drosophila melanogaster] 35 0.46
ref|NP_061856.1| nucleolar protein family A, member 1; GAR1 prot... 34 0.60
gb|AAM11125.1| GM14102p [Drosophila melanogaster] 34 0.78
>dbj|BAB10554.1| ATP-dependent RNA helicase-like protein [Arabidopsis thaliana]
Length = 564
Score = 44.3 bits (103), Expect = 6e-04
Identities = 26/51 (50%), Positives = 33/51 (63%), Gaps = 5/51 (9%)
Frame = -3
Query: 451 SVMARSAGSGPLGSGG--SFRSRGRG---GYGNRGSISGSNAIPVGMKRPW 314
S + RS+GSG GSGG +FR RG G G+G++ S S SN +P G KR W
Sbjct: 514 SALVRSSGSGYGGSGGGRNFRPRGGGRGGGFGDKRSRSTSNFVPHGGKRTW 564
>gb|EAA33724.1| hypothetical protein [Neurospora crassa]
Length = 651
Score = 36.6 bits (83), Expect = 0.12
Identities = 21/49 (42%), Positives = 28/49 (56%), Gaps = 7/49 (14%)
Frame = -3
Query: 445 MARSAGSGPLGSGGSFRSRG-------RGGYGNRGSISGSNAIPVGMKR 320
MAR +G G G G +R RG RGG G GS+ G+NA+P+ +R
Sbjct: 603 MARYSGGGG-GRFGGYRGRGGGGWRGGRGGGGGGGSVGGANALPLNNRR 650
>emb|CAA28903.1| fibrillarin [Drosophila melanogaster]
Length = 147
Score = 34.7 bits (78), Expect = 0.46
Identities = 15/33 (45%), Positives = 17/33 (51%)
Frame = -3
Query: 448 VMARSAGSGPLGSGGSFRSRGRGGYGNRGSISG 350
+ +R G G G GG FR RG GG G G G
Sbjct: 13 IQSRGGGGGGGGGGGGFRGRGGGGGGGGGGFGG 45
>ref|NP_061856.1| nucleolar protein family A, member 1; GAR1 protein [Homo sapiens]
gi|15011916|ref|NP_127460.1| nucleolar protein family A,
member 1; GAR1 protein [Homo sapiens]
gi|7161181|emb|CAB76563.1| GAR1 protein [Homo sapiens]
gi|13097327|gb|AAH03413.1|AAH03413 nucleolar protein
family A, member 1 (H/ACA small nucleolar RNPs) [Homo
sapiens]
Length = 217
Score = 34.3 bits (77), Expect = 0.60
Identities = 15/29 (51%), Positives = 17/29 (57%)
Frame = -3
Query: 430 GSGPLGSGGSFRSRGRGGYGNRGSISGSN 344
G G G GG+FR GRGG+G G G N
Sbjct: 31 GGGGGGGGGNFRGGGRGGFGRGGGRGGFN 59
>gb|AAM11125.1| GM14102p [Drosophila melanogaster]
Length = 585
Score = 33.9 bits (76), Expect = 0.78
Identities = 14/27 (51%), Positives = 17/27 (62%)
Frame = -3
Query: 430 GSGPLGSGGSFRSRGRGGYGNRGSISG 350
GSGP+ + G+F GRGGYG G G
Sbjct: 112 GSGPMSNMGNFMQTGRGGYGTGGGGGG 138
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 384,949,862
Number of Sequences: 1393205
Number of extensions: 8297045
Number of successful extensions: 43203
Number of sequences better than 10.0: 123
Number of HSP's better than 10.0 without gapping: 31525
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 41746
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
