Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003408A_C01 KMC003408A_c01
(722 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM63758.1| transcriptional coactivator-like protein [Arabido... 67 3e-10
ref|NP_200803.1| RNA and export factor binding protein, putative... 67 3e-10
dbj|BAB08363.1| RNA and export factor binding protein 2-I-like p... 63 4e-09
gb|AAM98152.1| putative protein [Arabidopsis thaliana] 61 2e-08
ref|NP_195873.1| RNA and export factor binding protein, putative... 61 2e-08
>gb|AAM63758.1| transcriptional coactivator-like protein [Arabidopsis thaliana]
Length = 243
Score = 66.6 bits (161), Expect = 3e-10
Identities = 38/68 (55%), Positives = 45/68 (65%), Gaps = 1/68 (1%)
Frame = -3
Query: 714 AFGNRIGVP-QSRQGRGGALRRPGGRGQGIRGNRGRERGRGGGRDEKVSAKDLDADLEKY 538
A GN G P + QGRGG +R GGRG G RG GR R G G EK+SA+DLDADL+KY
Sbjct: 178 ANGNSNGAPWRGGQGRGG--QRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 235
Query: 537 HAESMQLN 514
H+ M+ N
Sbjct: 236 HSGDMETN 243
>ref|NP_200803.1| RNA and export factor binding protein, putative; protein id:
At5g59950.1, supported by cDNA: 26907. [Arabidopsis
thaliana] gi|22531190|gb|AAM97099.1| transcriptional
coactivator-like protein [Arabidopsis thaliana]
gi|23198018|gb|AAN15536.1| transcriptional
coactivator-like protein [Arabidopsis thaliana]
Length = 244
Score = 66.6 bits (161), Expect = 3e-10
Identities = 38/68 (55%), Positives = 45/68 (65%), Gaps = 1/68 (1%)
Frame = -3
Query: 714 AFGNRIGVP-QSRQGRGGALRRPGGRGQGIRGNRGRERGRGGGRDEKVSAKDLDADLEKY 538
A GN G P + QGRGG +R GGRG G RG GR R G G EK+SA+DLDADL+KY
Sbjct: 178 ANGNSNGAPWRGGQGRGGQ-QRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADLDKY 236
Query: 537 HAESMQLN 514
H+ M+ N
Sbjct: 237 HSGDMETN 244
>dbj|BAB08363.1| RNA and export factor binding protein 2-I-like protein [Arabidopsis
thaliana]
Length = 239
Score = 63.2 bits (152), Expect = 4e-09
Identities = 33/55 (60%), Positives = 39/55 (70%)
Frame = -3
Query: 678 QGRGGALRRPGGRGQGIRGNRGRERGRGGGRDEKVSAKDLDADLEKYHAESMQLN 514
QGRGG +R GGRG G RG GR R G G EK+SA+DLDADL+KYH+ M+ N
Sbjct: 186 QGRGGQ-QRGGGRGGGGRGGGGRGRRPGKGPAEKISAEDLDADLDKYHSGDMETN 239
>gb|AAM98152.1| putative protein [Arabidopsis thaliana]
Length = 292
Score = 60.8 bits (146), Expect = 2e-08
Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 9/62 (14%)
Frame = -3
Query: 678 QGRGGALRRPGGRGQG---IRGNRGRERGRGG------GRDEKVSAKDLDADLEKYHAES 526
+GRGG + RP G G G RG RG RGRGG GRDE VSA+DLDA+L+KYH E+
Sbjct: 230 RGRGGFMGRPRGGGFGGGNFRGGRGA-RGRGGRGSGGRGRDENVSAEDLDAELDKYHKEA 288
Query: 525 MQ 520
M+
Sbjct: 289 ME 290
>ref|NP_195873.1| RNA and export factor binding protein, putative; protein id:
At5g02530.1 [Arabidopsis thaliana]
gi|11358209|pir||T48274 hypothetical protein T22P11.120
- Arabidopsis thaliana gi|7413642|emb|CAB85990.1|
putative protein [Arabidopsis thaliana]
Length = 290
Score = 60.8 bits (146), Expect = 2e-08
Identities = 35/62 (56%), Positives = 42/62 (67%), Gaps = 9/62 (14%)
Frame = -3
Query: 678 QGRGGALRRPGGRGQG---IRGNRGRERGRGG------GRDEKVSAKDLDADLEKYHAES 526
+GRGG + RP G G G RG RG RGRGG GRDE VSA+DLDA+L+KYH E+
Sbjct: 228 RGRGGFMGRPRGGGFGGGNFRGGRGA-RGRGGRGSGGRGRDENVSAEDLDAELDKYHKEA 286
Query: 525 MQ 520
M+
Sbjct: 287 ME 288
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 689,082,999
Number of Sequences: 1393205
Number of extensions: 16354103
Number of successful extensions: 74964
Number of sequences better than 10.0: 338
Number of HSP's better than 10.0 without gapping: 53740
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71040
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 33780557640
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
