Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003405A_C01 KMC003405A_c01
(579 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM62930.1| phytochelatin synthetase-like protein [Arabidopsi... 111 7e-24
ref|NP_568930.1| phytochelatin synthetase - like protein; protei... 111 7e-24
pir||T52038 probable phytochelatin synthetase [imported] - Arabi... 111 7e-24
dbj|BAB02996.1| phytochelatin synthetase-like protein [Arabidops... 105 3e-22
gb|AAM67179.1| phytochelatin synthetase-like protein [Arabidopsi... 105 3e-22
>gb|AAM62930.1| phytochelatin synthetase-like protein [Arabidopsis thaliana]
Length = 456
Score = 111 bits (277), Expect = 7e-24
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = -1
Query: 564 LGNVQSEILFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWQPNASSKLAFSLLC 385
LGNVQSEILFRKD+STFTF+KGWAFPRRIYFNGDNCVMPPPD+YP+ PN S+ FS +
Sbjct: 383 LGNVQSEILFRKDQSTFTFEKGWAFPRRIYFNGDNCVMPPPDSYPFLPNGGSRSQFSFVA 442
Query: 384 TVMATL 367
V+ L
Sbjct: 443 AVLLPL 448
>ref|NP_568930.1| phytochelatin synthetase - like protein; protein id: At5g60920.1,
supported by cDNA: 17250., supported by cDNA:
gi_20453071 [Arabidopsis thaliana]
gi|14193657|gb|AAK56072.1|AF319663_1 putative
glycosylphosphatidylinositol-anchored protein
[Arabidopsis thaliana] gi|20453072|gb|AAM19781.1|
AT5g60920/MSL3_40 [Arabidopsis thaliana]
gi|24796996|gb|AAN64510.1| At5g60920/MSL3_40
[Arabidopsis thaliana]
Length = 456
Score = 111 bits (277), Expect = 7e-24
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = -1
Query: 564 LGNVQSEILFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWQPNASSKLAFSLLC 385
LGNVQSEILFRKD+STFTF+KGWAFPRRIYFNGDNCVMPPPD+YP+ PN S+ FS +
Sbjct: 383 LGNVQSEILFRKDQSTFTFEKGWAFPRRIYFNGDNCVMPPPDSYPFLPNGGSRSQFSFVA 442
Query: 384 TVMATL 367
V+ L
Sbjct: 443 AVLLPL 448
>pir||T52038 probable phytochelatin synthetase [imported] - Arabidopsis thaliana
gi|3559805|emb|CAA07251.1| putative phytochelatin
synthetase [Arabidopsis thaliana]
gi|10177315|dbj|BAB10641.1| phytochelatin synthetase
[Arabidopsis thaliana]
Length = 362
Score = 111 bits (277), Expect = 7e-24
Identities = 49/66 (74%), Positives = 56/66 (84%)
Frame = -1
Query: 564 LGNVQSEILFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWQPNASSKLAFSLLC 385
LGNVQSEILFRKD+STFTF+KGWAFPRRIYFNGDNCVMPPPD+YP+ PN S+ FS +
Sbjct: 289 LGNVQSEILFRKDQSTFTFEKGWAFPRRIYFNGDNCVMPPPDSYPFLPNGGSRSQFSFVA 348
Query: 384 TVMATL 367
V+ L
Sbjct: 349 AVLLPL 354
>dbj|BAB02996.1| phytochelatin synthetase-like protein [Arabidopsis thaliana]
Length = 442
Score = 105 bits (263), Expect = 3e-22
Identities = 46/73 (63%), Positives = 58/73 (79%)
Frame = -1
Query: 564 LGNVQSEILFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWQPNASSKLAFSLLC 385
+GNVQSE+LF+K+ FTF+KGWAFPRRIYFNGDNCVMPPPD+YPW PNAS +A S
Sbjct: 370 VGNVQSELLFQKNPLEFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPNASPNIATSPFV 429
Query: 384 TVMATLAYLVILL 346
++ T ++IL+
Sbjct: 430 ILLITFLSVLILM 442
>gb|AAM67179.1| phytochelatin synthetase-like protein [Arabidopsis thaliana]
Length = 441
Score = 105 bits (263), Expect = 3e-22
Identities = 46/73 (63%), Positives = 58/73 (79%)
Frame = -1
Query: 564 LGNVQSEILFRKDKSTFTFDKGWAFPRRIYFNGDNCVMPPPDAYPWQPNASSKLAFSLLC 385
+GNVQSE+LF+K+ FTF+KGWAFPRRIYFNGDNCVMPPPD+YPW PNAS +A S
Sbjct: 369 VGNVQSELLFQKNPLEFTFEKGWAFPRRIYFNGDNCVMPPPDSYPWLPNASPNIATSPFV 428
Query: 384 TVMATLAYLVILL 346
++ T ++IL+
Sbjct: 429 ILLITFLSVLILM 441
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 495,377,644
Number of Sequences: 1393205
Number of extensions: 10436800
Number of successful extensions: 23073
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 22538
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23070
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21426319650
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
