Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003404A_C01 KMC003404A_c01
(357 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_172530.1| hypothetical protein; protein id: At1g10600.1 [... 112 2e-24
pir||E86239 protein F20B24.2 [imported] - Arabidopsis thaliana g... 110 3e-24
gb|AAD39585.1|AC007067_25 T10O24.25 [Arabidopsis thaliana] 102 9e-22
ref|NP_680708.1| unknown protein; protein id: At4g16144.1 [Arabi... 94 3e-19
dbj|BAC03345.1| B1111E11.23 [Oryza sativa (japonica cultivar-gro... 94 4e-19
>ref|NP_172530.1| hypothetical protein; protein id: At1g10600.1 [Arabidopsis
thaliana]
Length = 271
Score = 112 bits (279), Expect = 2e-24
Identities = 46/63 (73%), Positives = 57/63 (90%)
Frame = -3
Query: 355 APTDTSRSCGLFRLTDPDGMEILKNCQEKGFHPHKEPDNGNPVYEHCSNVYKNSNLRFEI 176
APTD+S+S G+F+LTDP GME+L+ C E GFHPHKEP++GNPVYEHCSNVYKNSNLRF++
Sbjct: 160 APTDSSKSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFKL 219
Query: 175 FDL 167
+ L
Sbjct: 220 YPL 222
>pir||E86239 protein F20B24.2 [imported] - Arabidopsis thaliana
gi|6573732|gb|AAF17652.1|AC009398_1 F20B24.2
[Arabidopsis thaliana]
Length = 388
Score = 110 bits (276), Expect = 3e-24
Identities = 47/58 (81%), Positives = 53/58 (91%)
Frame = -3
Query: 337 RSCGLFRLTDPDGMEILKNCQEKGFHPHKEPDNGNPVYEHCSNVYKNSNLRFEIFDLR 164
RS G+F+LTDP GME+L+ C E GFHPHKEP++GNPVYEHCSNVYKNSNLRFEIFDLR
Sbjct: 331 RSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFEIFDLR 388
>gb|AAD39585.1|AC007067_25 T10O24.25 [Arabidopsis thaliana]
Length = 288
Score = 102 bits (255), Expect = 9e-22
Identities = 42/57 (73%), Positives = 51/57 (88%)
Frame = -3
Query: 337 RSCGLFRLTDPDGMEILKNCQEKGFHPHKEPDNGNPVYEHCSNVYKNSNLRFEIFDL 167
RS G+F+LTDP GME+L+ C E GFHPHKEP++GNPVYEHCSNVYKNSNLRF+++ L
Sbjct: 183 RSYGIFKLTDPGGMEVLRGCSETGFHPHKEPEDGNPVYEHCSNVYKNSNLRFKLYPL 239
>ref|NP_680708.1| unknown protein; protein id: At4g16144.1 [Arabidopsis thaliana]
Length = 440
Score = 94.4 bits (233), Expect = 3e-19
Identities = 35/64 (54%), Positives = 53/64 (82%)
Frame = -3
Query: 355 APTDTSRSCGLFRLTDPDGMEILKNCQEKGFHPHKEPDNGNPVYEHCSNVYKNSNLRFEI 176
APTD S G+F L+DP G+ +++NCQ++GFHPH+E ++GNP+YEHCS+V+ N+ L++E+
Sbjct: 377 APTDESTPHGIFHLSDPSGVSVIRNCQQRGFHPHEESEDGNPIYEHCSHVFLNAKLKYEV 436
Query: 175 FDLR 164
DLR
Sbjct: 437 LDLR 440
>dbj|BAC03345.1| B1111E11.23 [Oryza sativa (japonica cultivar-group)]
Length = 541
Score = 94.0 bits (232), Expect = 4e-19
Identities = 38/64 (59%), Positives = 51/64 (79%)
Frame = -3
Query: 355 APTDTSRSCGLFRLTDPDGMEILKNCQEKGFHPHKEPDNGNPVYEHCSNVYKNSNLRFEI 176
APTDT+R G+F LTDP GM ++ +CQE GFHPH+EP +G +YEHCS+VY N N++F++
Sbjct: 476 APTDTTRKHGIFHLTDPGGMGVIHDCQESGFHPHEEPLDGTSIYEHCSHVYMNPNVKFDM 535
Query: 175 FDLR 164
DLR
Sbjct: 536 VDLR 539
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 315,741,025
Number of Sequences: 1393205
Number of extensions: 6448652
Number of successful extensions: 18019
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 17589
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18008
length of database: 448,689,247
effective HSP length: 94
effective length of database: 317,727,977
effective search space used: 7625471448
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
