Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003403A_C01 KMC003403A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC43483.1| putative shikimate kinase precursor [Arabidopsis... 83 3e-15
dbj|BAC42436.1| putative shikimate kinase [Arabidopsis thaliana]... 75 5e-13
ref|NP_195664.1| shikimate kinase - like protein; protein id: At... 75 5e-13
ref|NP_179785.1| putative shikimate kinase precursor; protein id... 72 3e-12
sp|Q00497|AROK_LYCES Shikimate kinase, chloroplast precursor gi|... 70 2e-11
>dbj|BAC43483.1| putative shikimate kinase precursor [Arabidopsis thaliana]
Length = 303
Score = 82.8 bits (203), Expect = 3e-15
Identities = 42/69 (60%), Positives = 53/69 (75%)
Frame = -3
Query: 548 EAGDAYTKTFMRLSSLFEERSEAYANANARVSLENIAAKLDPKDASHLSPKTIAIEALEQ 369
E+GDAY+ F RLS++++ER EAY NANARVSLENIAAK K+ S L+P IAIEA EQ
Sbjct: 226 ESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEAFEQ 285
Query: 368 INGFLKGED 342
+ FL+ E+
Sbjct: 286 VLSFLEKEE 294
>dbj|BAC42436.1| putative shikimate kinase [Arabidopsis thaliana]
gi|28950863|gb|AAO63355.1| At4g39540 [Arabidopsis
thaliana]
Length = 300
Score = 75.1 bits (183), Expect = 5e-13
Identities = 37/70 (52%), Positives = 48/70 (67%)
Frame = -3
Query: 548 EAGDAYTKTFMRLSSLFEERSEAYANANARVSLENIAAKLDPKDASHLSPKTIAIEALEQ 369
E+GD YT RLS++++ R EAY A+ARVSLENI KL + S L+P IAIEA EQ
Sbjct: 224 ESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQ 283
Query: 368 INGFLKGEDG 339
+ +L+ EDG
Sbjct: 284 VQSYLEKEDG 293
>ref|NP_195664.1| shikimate kinase - like protein; protein id: At4g39540.1
[Arabidopsis thaliana] gi|7434489|pir||T09370 shikimate
kinase homolog F23K16.170 - Arabidopsis thaliana
gi|5042170|emb|CAB44689.1| shikimate kinase-like protein
[Arabidopsis thaliana] gi|7270938|emb|CAB80617.1|
shikimate kinase-like protein [Arabidopsis thaliana]
Length = 305
Score = 75.1 bits (183), Expect = 5e-13
Identities = 37/70 (52%), Positives = 48/70 (67%)
Frame = -3
Query: 548 EAGDAYTKTFMRLSSLFEERSEAYANANARVSLENIAAKLDPKDASHLSPKTIAIEALEQ 369
E+GD YT RLS++++ R EAY A+ARVSLENI KL + S L+P IAIEA EQ
Sbjct: 229 ESGDTYTAALNRLSTIWDARGEAYTKASARVSLENITLKLGYRSVSDLTPAEIAIEAFEQ 288
Query: 368 INGFLKGEDG 339
+ +L+ EDG
Sbjct: 289 VQSYLEKEDG 298
>ref|NP_179785.1| putative shikimate kinase precursor; protein id: At2g21940.1
[Arabidopsis thaliana] gi|20137565|sp|Q9SJ05|AROK_ARATH
Probable shikimate kinase, chloroplast precursor
gi|25288007|pir||A84607 probable shikimate kinase
precursor [imported] - Arabidopsis thaliana
gi|4417286|gb|AAD20411.1| putative shikimate kinase
precursor [Arabidopsis thaliana]
Length = 292
Score = 72.4 bits (176), Expect = 3e-12
Identities = 37/65 (56%), Positives = 48/65 (72%)
Frame = -3
Query: 548 EAGDAYTKTFMRLSSLFEERSEAYANANARVSLENIAAKLDPKDASHLSPKTIAIEALEQ 369
E+GDAY+ F RLS++++ER EAY NANARVSLENIAAK K+ S L+P IAIE +
Sbjct: 226 ESGDAYSVAFKRLSAIWDERGEAYTNANARVSLENIAAKRGYKNVSDLTPTEIAIEVSQV 285
Query: 368 INGFL 354
++ L
Sbjct: 286 LSQLL 290
>sp|Q00497|AROK_LYCES Shikimate kinase, chloroplast precursor gi|100253|pir||S21584
shikimate kinase (EC 2.7.1.71) precursor - tomato
gi|19349|emb|CAA45121.1| shikimate kinase precursor
[Lycopersicon esculentum]
Length = 300
Score = 70.1 bits (170), Expect = 2e-11
Identities = 37/66 (56%), Positives = 45/66 (68%)
Frame = -3
Query: 548 EAGDAYTKTFMRLSSLFEERSEAYANANARVSLENIAAKLDPKDASHLSPKTIAIEALEQ 369
E+GD Y T RL++L E R E YANA+ARVSLENIA K + KD H++P I +E L Q
Sbjct: 228 ESGDVYDTTLKRLTTLMETRGENYANASARVSLENIALKRE-KDVCHITPAEITLEVLIQ 286
Query: 368 INGFLK 351
I FLK
Sbjct: 287 IENFLK 292
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 479,809,083
Number of Sequences: 1393205
Number of extensions: 10466343
Number of successful extensions: 27235
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 26610
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 27229
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
