Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003402A_C01 KMC003402A_c01
(451 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_671927.1| similar to CAAX prenyl protease 2; protein id: ... 139 6e-33
dbj|BAC43705.1| unknown protein [Arabidopsis thaliana] gi|289508... 137 2e-32
ref|NP_005124.1| prenyl protein protease RCE1; RCE1 (S. Cerevisi... 72 2e-12
ref|NP_075620.1| Ras and a-factor-converting enzyme 1 homolog (S... 71 3e-12
ref|XP_219685.1| similar to Ras and a-factor-converting enzyme 1... 71 3e-12
>ref|NP_671927.1| similar to CAAX prenyl protease 2; protein id: At2g36305.1
[Arabidopsis thaliana]
Length = 242
Score = 139 bits (351), Expect = 6e-33
Identities = 61/90 (67%), Positives = 74/90 (81%)
Frame = -3
Query: 449 GLQLGYTVIFGSYASFLFIRTGHLAAPLVAHIYCNFMGLPVLYSERSGIVSIGFIMGFLG 270
GLQLGYTVIFG+YASFLFIRTGHLAAPL AHI+CN+MGLPVLY+ G+VS F+ G +G
Sbjct: 152 GLQLGYTVIFGAYASFLFIRTGHLAAPLFAHIFCNYMGLPVLYANGKGLVSAAFLGGVVG 211
Query: 269 FLWLLYPVTGPDLYNDRIDNCNCWQGYCSW 180
F+ LL+P+T P +YND ++C CW GYC W
Sbjct: 212 FVLLLFPLTKPLMYNDSTNDCPCWLGYCLW 241
>dbj|BAC43705.1| unknown protein [Arabidopsis thaliana] gi|28950887|gb|AAO63367.1|
At2g36305 [Arabidopsis thaliana]
Length = 311
Score = 137 bits (346), Expect = 2e-32
Identities = 61/90 (67%), Positives = 73/90 (80%)
Frame = -3
Query: 449 GLQLGYTVIFGSYASFLFIRTGHLAAPLVAHIYCNFMGLPVLYSERSGIVSIGFIMGFLG 270
GLQLGYTVIFG+YASFLFIRTGHLAAPL AHI+CN MGLPVLY+ G+VS F+ G +G
Sbjct: 221 GLQLGYTVIFGAYASFLFIRTGHLAAPLFAHIFCNCMGLPVLYANGKGLVSAAFLGGVVG 280
Query: 269 FLWLLYPVTGPDLYNDRIDNCNCWQGYCSW 180
F+ LL+P+T P +YND ++C CW GYC W
Sbjct: 281 FVLLLFPLTKPLMYNDSTNDCPCWLGYCLW 310
>ref|NP_005124.1| prenyl protein protease RCE1; RCE1 (S. Cerevisiae) homolog, prenyl
protein protease; farnesylated protein-converting enzyme
2; prenyl protein protease RCE1B [Homo sapiens]
gi|13431529|sp|Q9Y256|FAC2_HUMAN CAAX prenyl protease 2
(Prenyl protein-specific endoprotease 2)
(Farnesylated-proteins converting enzyme 2) (FACE-2)
(hRCE1) gi|4558497|gb|AAD22632.1|AF121951_1 CAAX prenyl
protein protease RCE1 [Homo sapiens]
gi|5327061|emb|CAB46278.1| farnesylated-proteins
converting enzyme 2 [Homo sapiens]
Length = 329
Score = 72.0 bits (175), Expect = 2e-12
Identities = 34/77 (44%), Positives = 50/77 (64%), Gaps = 5/77 (6%)
Frame = -3
Query: 443 QLGYTVIFGSYASFLFIRTGHLAAPLVAHIYCNFMGLPVL-----YSERSGIVSIGFIMG 279
Q YT +FG+Y +FLFIRTGHL P++ H +CN+MG P + + +R +++ G+ +G
Sbjct: 233 QFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQRRPLLA-GYALG 291
Query: 278 FLGFLWLLYPVTGPDLY 228
FL LL P+T P LY
Sbjct: 292 VGLFLLLLQPLTDPKLY 308
>ref|NP_075620.1| Ras and a-factor-converting enzyme 1 homolog (S. cerevisiae) [Mus
musculus] gi|13431521|sp|P57791|FAC2_MOUSE CAAX prenyl
protease 2 (Prenyl protein-specific endoprotease 2)
(Farnesylated-proteins converting enzyme 2) (FACE-2)
gi|11342584|emb|CAC17013.1| farnesylated-proteins
converting enzyme-2 [Mus musculus]
gi|11342586|emb|CAC17014.1| farnesylated-proteins
converting enzyme-2 [Mus musculus]
Length = 329
Score = 70.9 bits (172), Expect = 3e-12
Identities = 34/76 (44%), Positives = 46/76 (59%), Gaps = 4/76 (5%)
Frame = -3
Query: 443 QLGYTVIFGSYASFLFIRTGHLAAPLVAHIYCNFMGLP----VLYSERSGIVSIGFIMGF 276
Q YT +FG+Y +FLFIRTGHL P++ H +CN+MG P L + + G+ +G
Sbjct: 233 QFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQKWPLLAGYALGV 292
Query: 275 LGFLWLLYPVTGPDLY 228
FL LL P+T P LY
Sbjct: 293 GLFLLLLQPLTDPKLY 308
>ref|XP_219685.1| similar to Ras and a-factor-converting enzyme 1 homolog (S.
cerevisiae) [Mus musculus] [Rattus norvegicus]
Length = 319
Score = 70.9 bits (172), Expect = 3e-12
Identities = 34/76 (44%), Positives = 46/76 (59%), Gaps = 4/76 (5%)
Frame = -3
Query: 443 QLGYTVIFGSYASFLFIRTGHLAAPLVAHIYCNFMGLP----VLYSERSGIVSIGFIMGF 276
Q YT +FG+Y +FLFIRTGHL P++ H +CN+MG P L + + G+ +G
Sbjct: 223 QFSYTAVFGAYTAFLFIRTGHLIGPVLCHSFCNYMGFPAVCAALEHPQKWPLLAGYALGV 282
Query: 275 LGFLWLLYPVTGPDLY 228
FL LL P+T P LY
Sbjct: 283 GLFLLLLQPLTDPKLY 298
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 383,998,923
Number of Sequences: 1393205
Number of extensions: 8266515
Number of successful extensions: 21013
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 20592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21006
length of database: 448,689,247
effective HSP length: 125
effective length of database: 274,538,622
effective search space used: 6588926928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
