Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003400A_C01 KMC003400A_c01
(462 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_193721.1| putative protein; protein id: At4g19860.1 [Arab... 103 1e-21
dbj|BAC65711.1| mKIAA1046 protein [Mus musculus] 32 3.2
ref|NP_337718.1| pterin-4-alpha-carbinolamine dehydratase [Mycob... 32 3.2
ref|XP_194424.1| RIKEN cDNA 4930431L18 [Mus musculus] 32 3.2
ref|NP_755290.1| Protease III precursor [Escherichia coli CFT073... 32 3.2
>ref|NP_193721.1| putative protein; protein id: At4g19860.1 [Arabidopsis thaliana]
gi|7452457|pir||T04767 hypothetical protein T16H5.220 -
Arabidopsis thaliana gi|3250695|emb|CAA19703.1| putative
protein [Arabidopsis thaliana]
gi|7268782|emb|CAB78988.1| putative protein [Arabidopsis
thaliana]
Length = 493
Score = 103 bits (256), Expect = 1e-21
Identities = 53/101 (52%), Positives = 72/101 (70%)
Frame = -2
Query: 461 PDPFSNPLNDYVILPTAFEVERHQEKGLEVISLRDEWEIISKDPDAQGNTADEMSLSSIS 282
PDPF NP+NDYVILPT +E E+ E GLEV S+++ W+IIS D + G T +++SIS
Sbjct: 396 PDPFYNPVNDYVILPTTYEFEKFHENGLEVASVKESWDIISDDNNI-GTTGS--TVNSIS 452
Query: 281 VSHEGTNNQSWSEAHATVTVHHGNEGKQHVHLNALAVSVDA 159
VS G + +EA AT+TV ++G+QHV LNA++VSVDA
Sbjct: 453 VSQPGDDQNPQAEARATLTVQPQSDGRQHVELNAVSVSVDA 493
>dbj|BAC65711.1| mKIAA1046 protein [Mus musculus]
Length = 947
Score = 32.0 bits (71), Expect = 3.2
Identities = 23/68 (33%), Positives = 34/68 (49%), Gaps = 6/68 (8%)
Frame = -2
Query: 380 LEVISLRDEWEIIS---KDPDAQGNTADEMSLSSISVSHEGTNNQSWSEAHATVTVHHGN 210
LE + L E + +S + PDA+ A +S +S+S HEG QS A + + G+
Sbjct: 729 LENLDLSKECDSVSAVDEFPDARVEGAHSLSAASVSSKHEGRVEQSSQTRKADIDLASGS 788
Query: 209 ---EGKQH 195
EGK H
Sbjct: 789 SAVEGKGH 796
>ref|NP_337718.1| pterin-4-alpha-carbinolamine dehydratase [Mycobacterium
tuberculosis CDC1551] gi|13883000|gb|AAK47532.1|
pterin-4-alpha-carbinolamine dehydratase [Mycobacterium
tuberculosis CDC1551]
Length = 142
Score = 32.0 bits (71), Expect = 3.2
Identities = 20/55 (36%), Positives = 24/55 (43%), Gaps = 4/55 (7%)
Frame = -2
Query: 284 SVSHEGTNNQSWSEAHATVTVHHGNEGKQHVHLNALAVSVDAS*MSR----PGWQ 132
S EGT S E H H +EGK +V LA DA+ + PGWQ
Sbjct: 5 STVEEGTMTVSTPEQHEQRASHDASEGKHNVCQGRLAALADAAVSEKLGALPGWQ 59
>ref|XP_194424.1| RIKEN cDNA 4930431L18 [Mus musculus]
Length = 237
Score = 32.0 bits (71), Expect = 3.2
Identities = 23/68 (33%), Positives = 34/68 (49%), Gaps = 6/68 (8%)
Frame = -2
Query: 380 LEVISLRDEWEIIS---KDPDAQGNTADEMSLSSISVSHEGTNNQSWSEAHATVTVHHGN 210
LE + L E + +S + PDA+ A +S +S+S HEG QS A + + G+
Sbjct: 19 LENLDLSKECDSVSAVDEFPDARVEGAHSLSAASVSSKHEGRVEQSSQTRKADIDLASGS 78
Query: 209 ---EGKQH 195
EGK H
Sbjct: 79 SAVEGKGH 86
>ref|NP_755290.1| Protease III precursor [Escherichia coli CFT073]
gi|26109657|gb|AAN81860.1|AE016765_262 Protease III
precursor [Escherichia coli CFT073]
Length = 962
Score = 32.0 bits (71), Expect = 3.2
Identities = 17/47 (36%), Positives = 25/47 (53%)
Frame = +1
Query: 43 KTSRNSASSSPSEYPYIQEMTTIIKLYRKYCHPGLDIHEASTETAKA 183
K + N A S P PYI + ++IK +KY HP L + E++ A
Sbjct: 491 KKAANIALSLPELNPYIPDDFSLIKSEKKYDHPELIVDESNLRVVYA 537
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 415,180,936
Number of Sequences: 1393205
Number of extensions: 8834644
Number of successful extensions: 22355
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 21722
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22341
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11998661767
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
