Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003399A_C01 KMC003399A_c01
(670 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM34773.1|AF509873_1 nam-like protein 10 [Petunia x hybrida] 62 9e-09
pir||S37101 ATAF1 protein - Arabidopsis thaliana (fragment) gi|1... 46 4e-04
ref|NP_171677.1| NAC domain protein, putative; protein id: At1g0... 46 4e-04
gb|AAM34766.1|AF509866_1 nam-like protein 3 [Petunia x hybrida] 35 1.2
ref|NP_611917.1| CG13579-PA [Drosophila melanogaster] gi|7291790... 26 3.9
>gb|AAM34773.1|AF509873_1 nam-like protein 10 [Petunia x hybrida]
Length = 304
Score = 61.6 bits (148), Expect = 9e-09
Identities = 28/51 (54%), Positives = 38/51 (73%), Gaps = 1/51 (1%)
Frame = -3
Query: 668 WEKS-LEFPYNYVDATLSNNNSNNNGFGSQFQSGNQLSPLQDMFLYMPKPF 519
WEK+ L+ P+NY+DAT +N+ GSQFQS Q+SPLQDMF+++ KPF
Sbjct: 254 WEKAALDLPFNYMDATTGATTLDNSLLGSQFQSSYQMSPLQDMFMHLHKPF 304
>pir||S37101 ATAF1 protein - Arabidopsis thaliana (fragment)
gi|1345506|emb|CAA52771.1| ATAF1 [Arabidopsis thaliana]
Length = 229
Score = 46.2 bits (108), Expect = 4e-04
Identities = 23/47 (48%), Positives = 32/47 (67%)
Frame = -3
Query: 659 SLEFPYNYVDATLSNNNSNNNGFGSQFQSGNQLSPLQDMFLYMPKPF 519
+L+F +NY+DAT+ +N FG S NQ+ PLQDMF+YM KP+
Sbjct: 190 TLDFGFNYIDATV------DNAFGGG-GSSNQMFPLQDMFMYMQKPY 229
>ref|NP_171677.1| NAC domain protein, putative; protein id: At1g01720.1, supported by
cDNA: 20909., supported by cDNA: gi_13877716, supported
by cDNA: gi_15292730 [Arabidopsis thaliana]
gi|25513582|pir||E86148 T1N6.12 protein - Arabidopsis
thaliana gi|8671840|gb|AAF78403.1|AC009273_9 Strong
similarity to OsNAC6 protein from Oryza sativa
gb|AB028185. ESTs gb|AI996805, gb|T22869 and
gb|AI100172 come from this gene. [Arabidopsis thaliana]
gi|13877717|gb|AAK43936.1|AF370617_1 OsNAC6 protein-like
protein [Arabidopsis thaliana]
Length = 289
Score = 46.2 bits (108), Expect = 4e-04
Identities = 23/47 (48%), Positives = 32/47 (67%)
Frame = -3
Query: 659 SLEFPYNYVDATLSNNNSNNNGFGSQFQSGNQLSPLQDMFLYMPKPF 519
+L+F +NY+DAT+ +N FG S NQ+ PLQDMF+YM KP+
Sbjct: 250 TLDFGFNYIDATV------DNAFGGG-GSSNQMFPLQDMFMYMQKPY 289
>gb|AAM34766.1|AF509866_1 nam-like protein 3 [Petunia x hybrida]
Length = 312
Score = 34.7 bits (78), Expect = 1.2
Identities = 19/54 (35%), Positives = 26/54 (47%), Gaps = 5/54 (9%)
Frame = -3
Query: 665 EKSLEFPYNYVDATLSNNNSNNNGFGSQFQSGN-----QLSPLQDMFLYMPKPF 519
E +L + NY+D + FG Q Q N Q +P DMF+YM KP+
Sbjct: 265 ESALNYQLNYLDGF------QDEPFGPQMQQQNCNIIDQFNPFHDMFMYMQKPY 312
>ref|NP_611917.1| CG13579-PA [Drosophila melanogaster] gi|7291790|gb|AAF47210.1|
CG13579-PA [Drosophila melanogaster]
Length = 706
Score = 25.8 bits (55), Expect(2) = 3.9
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = +3
Query: 420 HSHRHTHGPPVSCYRAMHLA 479
H H H HGPPV + +M ++
Sbjct: 295 HGHPHHHGPPVMGHLSMAMS 314
Score = 25.8 bits (55), Expect(2) = 3.9
Identities = 12/28 (42%), Positives = 13/28 (45%)
Frame = +2
Query: 284 HAPLDHPHPTATNQTHRC*TVDQHVHFH 367
H P HPHPTA Q + QH H
Sbjct: 243 HHPHPHPHPTAAQQLQ----MHQHQQHH 266
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 569,533,142
Number of Sequences: 1393205
Number of extensions: 12871884
Number of successful extensions: 61208
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 40462
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57206
length of database: 448,689,247
effective HSP length: 119
effective length of database: 282,897,852
effective search space used: 29138478756
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
