Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003398A_C01 KMC003398A_c01
(384 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T04846 protein kinase homolog F21P8.180 - Arabidopsis thali... 52 2e-06
pir||T04835 probable serine/threonine-specific protein kinase (E... 52 2e-06
dbj|BAC42412.1| putative receptor-like protein kinase 4 RLK4 [Ar... 52 2e-06
ref|NP_194060.2| serine/threonine kinase - like protein; protein... 52 2e-06
gb|AAK28315.1|AF224705_1 receptor-like protein kinase 4 [Arabido... 52 2e-06
>pir||T04846 protein kinase homolog F21P8.180 - Arabidopsis thaliana
gi|3021281|emb|CAA18476.1| serine/threonine kinase-like
protein [Arabidopsis thaliana]
gi|7269177|emb|CAB79284.1| serine/threonine kinase-like
protein [Arabidopsis thaliana]
Length = 682
Score = 51.6 bits (122), Expect = 2e-06
Identities = 29/77 (37%), Positives = 48/77 (61%), Gaps = 6/77 (7%)
Frame = -1
Query: 384 GLLCVQEKPDDRPTMTKVVSYLSSPLIELPFPEEPKSY-----KHSGVAQKMVAGESTSG 220
GLLCVQE PDDRP+M+ + L++ I LP P+ P + + + +A++++ G STS
Sbjct: 606 GLLCVQENPDDRPSMSTIFRMLTNVSITLPVPQPPGFFFRERSEPNPLAERLLPGPSTSM 665
Query: 219 S-VLSMNEMSVSISIPR 172
S S+++ S++ PR
Sbjct: 666 SFTCSVDDASITSVRPR 682
>pir||T04835 probable serine/threonine-specific protein kinase (EC 2.7.1.-)
F21P8.70 - Arabidopsis thaliana
gi|3021270|emb|CAA18465.1| serine/threonine kinase-like
protein [Arabidopsis thaliana]
gi|7269165|emb|CAB79273.1| serine/threonine kinase-like
protein [Arabidopsis thaliana]
Length = 633
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = -1
Query: 384 GLLCVQEKPDDRPTMTKVVSYLSSPLIELPFPEEPKSYKHSGVAQKMVAGESTSGSVL-S 208
GLLCVQE P +RPT++ +V L+S + LP P +P + S + + + ++TS S+L S
Sbjct: 562 GLLCVQEDPAERPTLSTIVLMLTSNTVTLPVPRQPGLFFQSRIGKDPLDTDTTSKSLLGS 621
Query: 207 MNEMSVSISIPR 172
+++ S++ PR
Sbjct: 622 VDDASITDIHPR 633
>dbj|BAC42412.1| putative receptor-like protein kinase 4 RLK4 [Arabidopsis thaliana]
gi|29029020|gb|AAO64889.1| At4g23180 [Arabidopsis
thaliana]
Length = 669
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = -1
Query: 384 GLLCVQEKPDDRPTMTKVVSYLSSPLIELPFPEEPKSYKHSGVAQKMVAGESTSGSVL-S 208
GLLCVQE P +RPT++ +V L+S + LP P +P + S + + + ++TS S+L S
Sbjct: 598 GLLCVQEDPAERPTLSTIVLMLTSNTVTLPVPRQPGLFFQSRIGKDPLDTDTTSKSLLGS 657
Query: 207 MNEMSVSISIPR 172
+++ S++ PR
Sbjct: 658 VDDASITDIHPR 669
>ref|NP_194060.2| serine/threonine kinase - like protein; protein id: At4g23290.1,
supported by cDNA: gi_20466232 [Arabidopsis thaliana]
gi|20466233|gb|AAM20434.1| serine/threonine kinase-like
protein [Arabidopsis thaliana]
gi|23198066|gb|AAN15560.1| serine/threonine kinase-like
protein [Arabidopsis thaliana]
Length = 600
Score = 51.6 bits (122), Expect = 2e-06
Identities = 29/77 (37%), Positives = 48/77 (61%), Gaps = 6/77 (7%)
Frame = -1
Query: 384 GLLCVQEKPDDRPTMTKVVSYLSSPLIELPFPEEPKSY-----KHSGVAQKMVAGESTSG 220
GLLCVQE PDDRP+M+ + L++ I LP P+ P + + + +A++++ G STS
Sbjct: 524 GLLCVQENPDDRPSMSTIFRMLTNVSITLPVPQPPGFFFRERSEPNPLAERLLPGPSTSM 583
Query: 219 S-VLSMNEMSVSISIPR 172
S S+++ S++ PR
Sbjct: 584 SFTCSVDDASITSVRPR 600
>gb|AAK28315.1|AF224705_1 receptor-like protein kinase 4 [Arabidopsis thaliana]
Length = 658
Score = 51.6 bits (122), Expect = 2e-06
Identities = 27/72 (37%), Positives = 46/72 (63%), Gaps = 1/72 (1%)
Frame = -1
Query: 384 GLLCVQEKPDDRPTMTKVVSYLSSPLIELPFPEEPKSYKHSGVAQKMVAGESTSGSVL-S 208
GLLCVQE P +RPT++ +V L+S + LP P +P + S + + + ++TS S+L S
Sbjct: 587 GLLCVQEDPAERPTLSTIVLMLTSNTVTLPVPRQPGLFFQSRIGKDPLDTDTTSKSLLGS 646
Query: 207 MNEMSVSISIPR 172
+++ S++ PR
Sbjct: 647 VDDASITDIHPR 658
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 283,340,781
Number of Sequences: 1393205
Number of extensions: 4940447
Number of successful extensions: 15142
Number of sequences better than 10.0: 360
Number of HSP's better than 10.0 without gapping: 14846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15138
length of database: 448,689,247
effective HSP length: 103
effective length of database: 305,189,132
effective search space used: 7324539168
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
