Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003396A_C01 KMC003396A_c01
(453 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
pir||T08588 hypothetical protein L23H3.30 - Arabidopsis thaliana... 59 3e-08
ref|NP_567896.1| putative protein; protein id: At4g32551.1, supp... 59 3e-08
gb|AAG32022.1|AF277458_1 LEUNIG [Arabidopsis thaliana] 59 3e-08
dbj|BAB17072.1| P0013F10.18 [Oryza sativa (japonica cultivar-gro... 52 2e-06
ref|NP_565749.1| expressed protein; protein id: At2g32700.1, sup... 44 0.001
>pir||T08588 hypothetical protein L23H3.30 - Arabidopsis thaliana
gi|4914452|emb|CAB43692.1| putative protein [Arabidopsis
thaliana] gi|7270159|emb|CAB79972.1| putative protein
[Arabidopsis thaliana]
Length = 930
Score = 58.5 bits (140), Expect = 3e-08
Identities = 27/34 (79%), Positives = 30/34 (87%)
Frame = -2
Query: 452 TLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 351
TL AH+GLIT+LAVST GLVASASHDK +KLWK
Sbjct: 897 TLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 930
>ref|NP_567896.1| putative protein; protein id: At4g32551.1, supported by cDNA:
gi_11141604 [Arabidopsis thaliana]
Length = 931
Score = 58.5 bits (140), Expect = 3e-08
Identities = 27/34 (79%), Positives = 30/34 (87%)
Frame = -2
Query: 452 TLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 351
TL AH+GLIT+LAVST GLVASASHDK +KLWK
Sbjct: 898 TLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
>gb|AAG32022.1|AF277458_1 LEUNIG [Arabidopsis thaliana]
Length = 931
Score = 58.5 bits (140), Expect = 3e-08
Identities = 27/34 (79%), Positives = 30/34 (87%)
Frame = -2
Query: 452 TLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 351
TL AH+GLIT+LAVST GLVASASHDK +KLWK
Sbjct: 898 TLPAHEGLITSLAVSTATGLVASASHDKLVKLWK 931
>dbj|BAB17072.1| P0013F10.18 [Oryza sativa (japonica cultivar-group)]
Length = 816
Score = 52.4 bits (124), Expect = 2e-06
Identities = 26/34 (76%), Positives = 30/34 (87%)
Frame = -2
Query: 452 TLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 351
TL+AHD LITALA S+ +GLVAS SHDKF+KLWK
Sbjct: 784 TLAAHDSLITALASSS-SGLVASTSHDKFVKLWK 816
>ref|NP_565749.1| expressed protein; protein id: At2g32700.1, supported by cDNA:
gi_13605814 [Arabidopsis thaliana]
gi|7486097|pir||T00798 hypothetical protein At2g32700
[imported] - Arabidopsis thaliana
gi|2914703|gb|AAC04493.1| expressed protein [Arabidopsis
thaliana] gi|13605815|gb|AAK32893.1|AF367306_1
At2g32700/F24L7.16 [Arabidopsis thaliana]
gi|25090107|gb|AAN72230.1| At2g32700/F24L7.16
[Arabidopsis thaliana]
Length = 787
Score = 43.5 bits (101), Expect = 0.001
Identities = 19/34 (55%), Positives = 27/34 (78%)
Frame = -2
Query: 452 TLSAHDGLITALAVSTVNGLVASASHDKFIKLWK 351
T++ H+ +I+ALA S G+VASASHDK +K+WK
Sbjct: 754 TVAGHECVISALAQSPSTGVVASASHDKSVKIWK 787
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 373,723,019
Number of Sequences: 1393205
Number of extensions: 7427373
Number of successful extensions: 20757
Number of sequences better than 10.0: 206
Number of HSP's better than 10.0 without gapping: 19152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20756
length of database: 448,689,247
effective HSP length: 112
effective length of database: 292,650,287
effective search space used: 11120710906
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
