Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003393A_C01 KMC003393A_c01
(620 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|ZP_00075883.1| hypothetical protein [Methanosarcina barkeri] 35 0.60
gb|AAF86999.1|AC005292_8 F26F24.15 [Arabidopsis thaliana] 32 8.7
emb|CAD55686.1| Hypothetical protein [Pyrococcus abyssi] 32 8.7
>gb|ZP_00075883.1| hypothetical protein [Methanosarcina barkeri]
Length = 82
Score = 35.4 bits (80), Expect = 0.60
Identities = 20/72 (27%), Positives = 39/72 (53%)
Frame = -2
Query: 514 ISTYIAVCFFLFGNIT*VLGNKYPSQRLEIIEASFTDVGDCLLLKHIYQIAFFFCLVVSL 335
+S +I + FF+F VL +++ + L I G+ L++ + I FF +++S+
Sbjct: 22 LSLFITMSFFIF-----VLYSEFTGKHLSI-------GGNYLIISLLVNIGFFMLILISV 69
Query: 334 HEFLKKLADSSK 299
HE +K ++SK
Sbjct: 70 HELIKNYREASK 81
>gb|AAF86999.1|AC005292_8 F26F24.15 [Arabidopsis thaliana]
Length = 247
Score = 31.6 bits (70), Expect = 8.7
Identities = 14/33 (42%), Positives = 20/33 (60%)
Frame = -2
Query: 412 FTDVGDCLLLKHIYQIAFFFCLVVSLHEFLKKL 314
F + DCLLL+ FF LV++LH F +K+
Sbjct: 209 FLSITDCLLLRLCSFYVFFLTLVITLHLFSRKI 241
>emb|CAD55686.1| Hypothetical protein [Pyrococcus abyssi]
Length = 795
Score = 31.6 bits (70), Expect = 8.7
Identities = 34/120 (28%), Positives = 53/120 (43%), Gaps = 11/120 (9%)
Frame = -2
Query: 610 FVAKSHVHLPAFA*FYFVAVYYTYWSFDS-----AL*ISTYIAVCFFLFGNIT*VLGNKY 446
F+A + H+ +F F V V YT W+F S Y+ V F +F ++ +L
Sbjct: 223 FIALAFSHILSFFLFSTVLVSYTIWTFLSKRIPEGTGKRYYLVVSFSIFASLLLILWFPP 282
Query: 445 PSQRLE----IIEASFTDVGDCLLLKH--IYQIAFFFCLVVSLHEFLKKLADSSKWELRI 284
+ +E IIE + ++ KH + I +F LVV L + KL +W RI
Sbjct: 283 YKRMVEAMVWIIENNKFFSTFAIITKHFRVVVIVIYFLLVVFLWLLISKLV---RWHDRI 339
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 469,609,982
Number of Sequences: 1393205
Number of extensions: 9247904
Number of successful extensions: 24239
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 23667
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24234
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 25017613016
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
