Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003392A_C01 KMC003392A_c01
(414 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAK98690.1|AC069158_2 Putative starch synthase [Oryza sativa] 100 6e-21
ref|NP_358626.1| Glycogen synthase [Streptococcus pneumoniae R6]... 42 0.001
ref|NP_345595.1| glycogen synthase [Streptococcus pneumoniae TIG... 42 0.001
ref|NP_687870.1| glycogen synthase [Streptococcus agalactiae 260... 42 0.002
ref|NP_735324.1| Unknown [Streptococcus agalactiae NEM316] gi|23... 42 0.002
>gb|AAK98690.1|AC069158_2 Putative starch synthase [Oryza sativa]
Length = 720
Score = 100 bits (248), Expect = 6e-21
Identities = 46/110 (41%), Positives = 75/110 (67%)
Frame = -1
Query: 414 SDIILCQSFVDPTDEIPLQALRYGAVPIAVSPDASTNRTMPFDRSHEATKYSQLVNSNFR 235
SDI LC SF DP+ +I ++A++YG+ P+ ++ ++ +R + + +T SQ + S +
Sbjct: 612 SDIFLCSSFYDPSLQIAIRAIKYGSAPVQINFPSNGSRQTEW-HDYPSTALSQYIISTYG 670
Query: 234 NMSLNLAIDGIRSNPSQWRRRIMEAMKHDLTWDGECYEVHVAAYSAIKNI 85
+MSL+ A+DGI++NPSQW RI +AM L+WD ECY++H AYS I+ +
Sbjct: 671 DMSLSQALDGIKNNPSQWDWRIKDAMSKVLSWDAECYDLHWEAYSVIRKL 720
>ref|NP_358626.1| Glycogen synthase [Streptococcus pneumoniae R6]
gi|25286761|pir||H98000 starch synthase (EC 2.4.1.21)
[imported] - Streptococcus pneumoniae (strain R6)
gi|15458650|gb|AAK99836.1| Glycogen synthase
[Streptococcus pneumoniae R6]
Length = 477
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = -1
Query: 411 DIILCQSFVDPTDEIPLQALRYGAVPIA--VSPDASTNRTM-PFDRSHEATKYSQLVNSN 241
D+ L S +P + A+RYG +P+ V T R P + S + L +
Sbjct: 369 DLFLMPSRFEPCGLSQMMAMRYGTLPLVHEVGGLRDTVRAFNPIEGSGTGFSFDNL-SPY 427
Query: 240 FRNMSLNLAIDGIRSNPSQWRRRIMEAMKHDLTWDGEC 127
+ N + A+D R++P WR +AM+ D +WD C
Sbjct: 428 WLNWTFQTALDLYRNHPDIWRNLQKQAMESDFSWDTAC 465
>ref|NP_345595.1| glycogen synthase [Streptococcus pneumoniae TIGR4]
gi|17366608|sp|Q97QS5|GLGA_STRPN Glycogen synthase
(Starch [bacterial glycogen] synthase)
gi|25286751|pir||B95130 glycogen synthase [imported] -
Streptococcus pneumoniae (strain TIGR4)
gi|14972601|gb|AAK75235.1| glycogen synthase
[Streptococcus pneumoniae TIGR4]
Length = 477
Score = 42.4 bits (98), Expect = 0.001
Identities = 28/98 (28%), Positives = 45/98 (45%), Gaps = 3/98 (3%)
Frame = -1
Query: 411 DIILCQSFVDPTDEIPLQALRYGAVPIA--VSPDASTNRTM-PFDRSHEATKYSQLVNSN 241
D+ L S +P + A+RYG +P+ V T R P + S + L +
Sbjct: 369 DLFLMPSRFEPCGLSQMMAMRYGTLPLVHEVGGLRDTVRAFNPIEGSGTGFSFDNL-SPY 427
Query: 240 FRNMSLNLAIDGIRSNPSQWRRRIMEAMKHDLTWDGEC 127
+ N + A+D R++P WR +AM+ D +WD C
Sbjct: 428 WLNWTFQTALDLYRNHPDIWRNLQKQAMESDFSWDTAC 465
>ref|NP_687870.1| glycogen synthase [Streptococcus agalactiae 2603V/R]
gi|22533875|gb|AAM99742.1|AE014230_22 glycogen synthase
[Streptococcus agalactiae 2603V/R]
Length = 476
Score = 41.6 bits (96), Expect = 0.002
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = -1
Query: 414 SDIILCQSFVDPTDEIPLQALRYGAVPIAVSPDASTNRTMPFDR-SHEATKYSQLVNSNF 238
SDI + S +P + A+RYG++P+ + + F++ T +S S +
Sbjct: 368 SDIFMMPSAFEPCGLSQMMAMRYGSLPLVHEVGGLKDTVVAFNQFDGSGTGFSFNHFSGY 427
Query: 237 RNM-SLNLAIDGIRSNPSQWRRRIMEAMKHDLTWDGEC 127
M +L LA++ P W++ +AM D +WD C
Sbjct: 428 WLMQTLKLALEVYNDYPEAWKKLQWQAMSKDFSWDTAC 465
>ref|NP_735324.1| Unknown [Streptococcus agalactiae NEM316]
gi|23095308|emb|CAD46518.1| Unknown [Streptococcus
agalactiae NEM316]
Length = 476
Score = 41.6 bits (96), Expect = 0.002
Identities = 26/98 (26%), Positives = 46/98 (46%), Gaps = 2/98 (2%)
Frame = -1
Query: 414 SDIILCQSFVDPTDEIPLQALRYGAVPIAVSPDASTNRTMPFDR-SHEATKYSQLVNSNF 238
SDI + S +P + A+RYG++P+ + + F++ T +S S +
Sbjct: 368 SDIFMMPSAFEPCGLSQMMAMRYGSLPLVHEVGGLKDTVVAFNQFDGSGTGFSFNHFSGY 427
Query: 237 RNM-SLNLAIDGIRSNPSQWRRRIMEAMKHDLTWDGEC 127
M +L LA++ P W++ +AM D +WD C
Sbjct: 428 WLMQTLKLALEVYNDYPEAWKKLQWQAMSKDFSWDTAC 465
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 338,895,326
Number of Sequences: 1393205
Number of extensions: 6521993
Number of successful extensions: 21720
Number of sequences better than 10.0: 100
Number of HSP's better than 10.0 without gapping: 21409
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21682
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 6990169968
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
