Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003389A_C01 KMC003389A_c01
(651 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM96959.1| putative protein [Arabidopsis thaliana] gi|280597... 177 1e-43
ref|NP_195317.1| putative protein; protein id: At4g35920.1 [Arab... 177 1e-43
gb|AAK32909.1|AF367322_1 AT4g35920/F4B14_190 [Arabidopsis thalia... 155 8e-38
ref|NP_179369.1| hypothetical protein; protein id: At2g17780.1 [... 145 4e-34
gb|AAM51833.1|AC105730_7 Unknown protein [Oryza sativa (japonica... 67 5e-13
>gb|AAM96959.1| putative protein [Arabidopsis thaliana] gi|28059788|gb|AAO30093.1|
putative protein [Arabidopsis thaliana]
Length = 421
Score = 177 bits (448), Expect = 1e-43
Identities = 81/99 (81%), Positives = 89/99 (89%)
Frame = -3
Query: 649 CGTFSKIASVAKNRPISSGEACNELMAYSLILSCCCYTCCVRRKLRKMLNITGGFVDDFL 470
CGT +KIA+ A NR ISS EACNELMAYSLILSCCCYTCCVRRKLRK LNITGGF+DDFL
Sbjct: 322 CGTLAKIATAASNRHISSAEACNELMAYSLILSCCCYTCCVRRKLRKTLNITGGFIDDFL 381
Query: 469 SHLMCCCCALVQEWREVEIRGANASEKTRTSPPTSQYME 353
SH+MCCCCALVQE REVEIRGA +EKT+ SPP+SQ+ME
Sbjct: 382 SHVMCCCCALVQELREVEIRGAYGTEKTKISPPSSQFME 420
>ref|NP_195317.1| putative protein; protein id: At4g35920.1 [Arabidopsis thaliana]
gi|7486392|pir||T04702 hypothetical protein F4B14.190 -
Arabidopsis thaliana gi|3036796|emb|CAA18486.1| putative
protein [Arabidopsis thaliana]
gi|3805858|emb|CAA21478.1| putative protein [Arabidopsis
thaliana] gi|7270544|emb|CAB81501.1| putative protein
[Arabidopsis thaliana]
Length = 447
Score = 177 bits (448), Expect = 1e-43
Identities = 81/99 (81%), Positives = 89/99 (89%)
Frame = -3
Query: 649 CGTFSKIASVAKNRPISSGEACNELMAYSLILSCCCYTCCVRRKLRKMLNITGGFVDDFL 470
CGT +KIA+ A NR ISS EACNELMAYSLILSCCCYTCCVRRKLRK LNITGGF+DDFL
Sbjct: 348 CGTLAKIATAASNRHISSAEACNELMAYSLILSCCCYTCCVRRKLRKTLNITGGFIDDFL 407
Query: 469 SHLMCCCCALVQEWREVEIRGANASEKTRTSPPTSQYME 353
SH+MCCCCALVQE REVEIRGA +EKT+ SPP+SQ+ME
Sbjct: 408 SHVMCCCCALVQELREVEIRGAYGTEKTKISPPSSQFME 446
>gb|AAK32909.1|AF367322_1 AT4g35920/F4B14_190 [Arabidopsis thaliana]
gi|22137178|gb|AAM91434.1| AT4g35920/F4B14_190
[Arabidopsis thaliana]
Length = 440
Score = 155 bits (392), Expect(2) = 8e-38
Identities = 71/82 (86%), Positives = 75/82 (90%)
Frame = -3
Query: 649 CGTFSKIASVAKNRPISSGEACNELMAYSLILSCCCYTCCVRRKLRKMLNITGGFVDDFL 470
CGT +KIA+ A NR ISS EACNELMAYSLILSCCCYTCCVRRKLRK LNITGGF+DDFL
Sbjct: 322 CGTLAKIATAASNRHISSAEACNELMAYSLILSCCCYTCCVRRKLRKTLNITGGFIDDFL 381
Query: 469 SHLMCCCCALVQEWREVEIRGA 404
SH+MCCCCALVQE REVEIRGA
Sbjct: 382 SHVMCCCCALVQELREVEIRGA 403
Score = 23.9 bits (50), Expect(2) = 8e-38
Identities = 9/15 (60%), Positives = 12/15 (80%)
Frame = -2
Query: 392 EDQNKPSNLPVHGIL 348
ED+NKP+ + VHG L
Sbjct: 411 EDENKPAFVAVHGTL 425
>ref|NP_179369.1| hypothetical protein; protein id: At2g17780.1 [Arabidopsis
thaliana] gi|25370624|pir||D84556 hypothetical protein
At2g17780 [imported] - Arabidopsis thaliana
Length = 417
Score = 145 bits (367), Expect = 4e-34
Identities = 70/103 (67%), Positives = 82/103 (78%), Gaps = 4/103 (3%)
Frame = -3
Query: 649 CGTFSKIASVAKNRPISSGEACNELMAYSLILSCCCYTCCVRRKLRKMLNITGGFVDDFL 470
CGT +KI++VA +R ISS E C L+ YSLILSCCCYTCC+R+KLRK LNITGG +DDFL
Sbjct: 314 CGTLAKISTVATSRQISSTEVCKNLIVYSLILSCCCYTCCIRKKLRKTLNITGGCIDDFL 373
Query: 469 SHLMCCCCALVQEWREVEIRGAN--ASEKT--RTSPPTSQYME 353
SHLMCCCCALVQE REVEI A+ +EK+ SPPT Q+ME
Sbjct: 374 SHLMCCCCALVQELREVEIHRASYAGTEKSNKEMSPPTPQFME 416
>gb|AAM51833.1|AC105730_7 Unknown protein [Oryza sativa (japonica cultivar-group)]
Length = 1202
Score = 67.4 bits (163), Expect(2) = 5e-13
Identities = 28/30 (93%), Positives = 29/30 (96%)
Frame = -3
Query: 493 GGFVDDFLSHLMCCCCALVQEWREVEIRGA 404
GG +DDFLSHLMCCCCALVQEWREVEIRGA
Sbjct: 300 GGCIDDFLSHLMCCCCALVQEWREVEIRGA 329
Score = 28.5 bits (62), Expect(2) = 5e-13
Identities = 10/16 (62%), Positives = 12/16 (74%)
Frame = -2
Query: 650 LWNIFKDC*CCKKQTH 603
LWNI KDC C++Q H
Sbjct: 284 LWNILKDCFNCEEQAH 299
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 517,038,581
Number of Sequences: 1393205
Number of extensions: 10348071
Number of successful extensions: 23194
Number of sequences better than 10.0: 42
Number of HSP's better than 10.0 without gapping: 22405
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23087
length of database: 448,689,247
effective HSP length: 118
effective length of database: 284,291,057
effective search space used: 27860523586
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
