Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003385A_C01 KMC003385A_c01
(575 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAF73006.1|AF262997_1 NADP-dependent malic protein [Ricinus c... 35 0.68
dbj|BAB61144.1| B1045D11.9 [Oryza sativa (japonica cultivar-grou... 35 0.68
ref|ZP_00128743.1| hypothetical protein [Desulfovibrio desulfuri... 34 1.2
ref|XP_283296.1| similar to hypothetical protein [Plasmodium fal... 34 1.5
ref|NP_630461.1| putative integral membrane protein [Streptomyce... 33 2.6
>gb|AAF73006.1|AF262997_1 NADP-dependent malic protein [Ricinus communis]
Length = 641
Score = 35.0 bits (79), Expect = 0.68
Identities = 27/73 (36%), Positives = 32/73 (42%)
Frame = +2
Query: 308 GLQGSTQAASTAPRGVKPVALAPRREGNLQISPETTRTEGKRDGGGRSRADRD*DTATAV 487
G Q + TAP +K VAL P RE N I E+T E RDG D A V
Sbjct: 19 GKQRAGLVVPTAPSSLKVVALNPNRERNGSIMMESTLQE-MRDGASVLDLDPKSTVAGGV 77
Query: 488 AQWHGEATNRSEQ 526
+GE T +Q
Sbjct: 78 RDVYGEDTATEDQ 90
>dbj|BAB61144.1| B1045D11.9 [Oryza sativa (japonica cultivar-group)]
gi|15408640|dbj|BAB64057.1| B1039D07.24 [Oryza sativa
(japonica cultivar-group)]
Length = 108
Score = 35.0 bits (79), Expect = 0.68
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = +1
Query: 397 DQPRNNQNRGKKGWWWPEQSR 459
+ PR RG+K WWWPE++R
Sbjct: 4 EAPRKEATRGEKEWWWPERAR 24
>ref|ZP_00128743.1| hypothetical protein [Desulfovibrio desulfuricans G20]
Length = 245
Score = 34.3 bits (77), Expect = 1.2
Identities = 12/27 (44%), Positives = 16/27 (58%)
Frame = +1
Query: 394 ADQPRNNQNRGKKGWWWPEQSRSRLRY 474
A QPR+ NR K WWP+ R +R+
Sbjct: 193 AGQPRDGDNRAKYALWWPDDGRLEMRF 219
>ref|XP_283296.1| similar to hypothetical protein [Plasmodium falciparum 3D7] [Mus
musculus]
Length = 101
Score = 33.9 bits (76), Expect = 1.5
Identities = 22/58 (37%), Positives = 26/58 (43%), Gaps = 4/58 (6%)
Frame = -2
Query: 211 SLVSKI*GACMIFPC*LF----TCISMSEHALVLNCLFVHALQNHCLGF*SH*CKFHC 50
S SK AC IF C + +S H L +CL VH L HCL +H HC
Sbjct: 41 SAPSKTGNACCIFLCSSLGMNESAHCLSAHCLSAHCLSVHCLSAHCLS--AHCLSAHC 96
>ref|NP_630461.1| putative integral membrane protein [Streptomyces coelicolor A3(2)]
gi|7480805|pir||T34981 probable integral membrane
protein - Streptomyces coelicolor
gi|3395539|emb|CAA20158.1| putative integral membrane
protein [Streptomyces coelicolor A3(2)]
Length = 344
Score = 33.1 bits (74), Expect = 2.6
Identities = 18/44 (40%), Positives = 23/44 (51%)
Frame = -3
Query: 459 SALLRPPPSLFPSVLVVSGLICRFPSLLGASATGLTPLGAVEAA 328
S L RP P LF + L V+ L+C +LG A L L A A+
Sbjct: 242 SVLARPRPLLFAAALAVAALVCLLSFVLGRVAARLLRLDAATAS 285
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 488,335,743
Number of Sequences: 1393205
Number of extensions: 10356758
Number of successful extensions: 30956
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 29328
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 30887
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 21530810025
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
