Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003382A_C01 KMC003382A_c01
(739 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_196957.1| putative protein; protein id: At5g14530.1, supp... 180 2e-44
dbj|BAC57753.1| OSJNBb0005G07.13 [Oryza sativa (japonica cultiva... 92 1e-17
pir||T52067 hypothetical protein [imported] - rice gi|4680192|gb... 90 2e-17
dbj|BAB10703.1| WD repeat protein-like [Arabidopsis thaliana] 87 2e-16
ref|NP_569031.1| WD repeat protein-like; protein id: At5g66240.1... 87 2e-16
>ref|NP_196957.1| putative protein; protein id: At5g14530.1, supported by cDNA:
232187. [Arabidopsis thaliana] gi|11358037|pir||T48626
hypothetical protein T15N1.20 - Arabidopsis thaliana
gi|7573302|emb|CAB87620.1| putative protein [Arabidopsis
thaliana] gi|21592393|gb|AAM64344.1| unknown
[Arabidopsis thaliana]
Length = 330
Score = 180 bits (457), Expect = 2e-44
Identities = 87/117 (74%), Positives = 99/117 (84%), Gaps = 1/117 (0%)
Frame = -1
Query: 739 NDGKSMLLTTTNNHTYVLDAYGGEKRCGFNLEPSPGTTIEATFTPDGKYLVAGSGGGTMH 560
NDGKSMLLTTTNN+ YVLDAY GEK+CGF+LEPS GT IEATFTPDGKY+++GSG GT+H
Sbjct: 210 NDGKSMLLTTTNNNIYVLDAYRGEKKCGFSLEPSQGTPIEATFTPDGKYVLSGSGDGTLH 269
Query: 559 AWNIETKNEVACWSSHIGVPWCLKWAPRRAMFAAASSVLTFWIPNN-EYGATATPIT 392
AWNIE +EVA W ++IGV CLKWAPRRAMF AAS+VLTFWIPN+ E A A P T
Sbjct: 270 AWNIENPSEVARWENNIGVVSCLKWAPRRAMFVAASTVLTFWIPNDGESPAPADPPT 326
>dbj|BAC57753.1| OSJNBb0005G07.13 [Oryza sativa (japonica cultivar-group)]
Length = 322
Score = 91.7 bits (226), Expect = 1e-17
Identities = 42/106 (39%), Positives = 70/106 (65%), Gaps = 1/106 (0%)
Frame = -1
Query: 739 NDGKSMLLTTTNNHTYVLDAYGGEKRCGFNLEPS-PGTTIEATFTPDGKYLVAGSGGGTM 563
+DG+ +LLTT +VLD++ G +N++P +T+EA+F+PDG ++++GSG G++
Sbjct: 207 SDGRRLLLTTKAGRVHVLDSFHGNNIATYNVKPVVSNSTLEASFSPDGNHIISGSGDGSV 266
Query: 562 HAWNIETKNEVACWSSHIGVPWCLKWAPRRAMFAAASSVLTFWIPN 425
+AWN+ + +VA W S P ++WAP MF ASS L+ W+P+
Sbjct: 267 YAWNVRS-GKVARWGSTDSEPPLIRWAPGSLMFLTASSELSCWVPD 311
>pir||T52067 hypothetical protein [imported] - rice
gi|4680192|gb|AAD27557.1|AF111710_3 hypothetical protein
[Oryza sativa subsp. indica]
Length = 789
Score = 90.1 bits (222), Expect(2) = 2e-17
Identities = 39/52 (75%), Positives = 45/52 (86%)
Frame = -1
Query: 739 NDGKSMLLTTTNNHTYVLDAYGGEKRCGFNLEPSPGTTIEATFTPDGKYLVA 584
NDGKSMLLTTTNNH YVLDAYGG+KRCGF+LE SP EA FTPDG+Y+++
Sbjct: 694 NDGKSMLLTTTNNHIYVLDAYGGDKRCGFSLESSPNVATEAAFTPDGQYVIS 745
Score = 20.8 bits (42), Expect(2) = 2e-17
Identities = 11/34 (32%), Positives = 17/34 (49%)
Frame = -3
Query: 527 MLEQPYWCALVLEVGPSPGHVRCSLKCSHVLDTQ 426
+LEQ + EVG +V + C + LD+Q
Sbjct: 748 LLEQSHRSYHCFEVGSPSSNVCNCVNCPNFLDSQ 781
>dbj|BAB10703.1| WD repeat protein-like [Arabidopsis thaliana]
Length = 328
Score = 87.4 bits (215), Expect = 2e-16
Identities = 42/106 (39%), Positives = 64/106 (59%), Gaps = 1/106 (0%)
Frame = -1
Query: 739 NDGKSMLLTTTNNHTYVLDAYGGEKRCGFNLEPSPG-TTIEATFTPDGKYLVAGSGGGTM 563
NDG+ MLLTT + +VLD++ G F+++P G +T++A F+P+G ++V+GSG G+
Sbjct: 212 NDGRLMLLTTMDGFIHVLDSFRGTLLSTFSVKPVAGESTLDAAFSPEGMFVVSGSGDGST 271
Query: 562 HAWNIETKNEVACWSSHIGVPWCLKWAPRRAMFAAASSVLTFWIPN 425
HAW + + +V W P +KW P MF SS L F IP+
Sbjct: 272 HAWGVRSGKQVHSWMGLGSEPPVIKWGPGSPMFVTGSSELAFVIPD 317
>ref|NP_569031.1| WD repeat protein-like; protein id: At5g66240.1, supported by cDNA:
11277., supported by cDNA: gi_19698940 [Arabidopsis
thaliana] gi|19698941|gb|AAL91206.1| WD repeat
protein-like [Arabidopsis thaliana]
gi|27311959|gb|AAO00945.1| WD repeat protein-like
[Arabidopsis thaliana]
Length = 331
Score = 87.4 bits (215), Expect = 2e-16
Identities = 42/106 (39%), Positives = 64/106 (59%), Gaps = 1/106 (0%)
Frame = -1
Query: 739 NDGKSMLLTTTNNHTYVLDAYGGEKRCGFNLEPSPG-TTIEATFTPDGKYLVAGSGGGTM 563
NDG+ MLLTT + +VLD++ G F+++P G +T++A F+P+G ++V+GSG G+
Sbjct: 215 NDGRLMLLTTMDGFIHVLDSFRGTLLSTFSVKPVAGESTLDAAFSPEGMFVVSGSGDGST 274
Query: 562 HAWNIETKNEVACWSSHIGVPWCLKWAPRRAMFAAASSVLTFWIPN 425
HAW + + +V W P +KW P MF SS L F IP+
Sbjct: 275 HAWGVRSGKQVHSWMGLGSEPPVIKWGPGSPMFVTGSSELAFVIPD 320
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 669,339,501
Number of Sequences: 1393205
Number of extensions: 15756618
Number of successful extensions: 43546
Number of sequences better than 10.0: 435
Number of HSP's better than 10.0 without gapping: 39866
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 43438
length of database: 448,689,247
effective HSP length: 120
effective length of database: 281,504,647
effective search space used: 35188080875
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
