Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003379A_C01 KMC003379A_c01
(508 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_197711.2| unknown protein; protein id: At5g23200.1, suppo... 178 4e-44
dbj|BAB11175.1| gene_id:MKD15.6~unknown protein [Arabidopsis tha... 178 4e-44
dbj|BAC43608.1| unknown protein [Arabidopsis thaliana] 132 3e-30
ref|NP_196444.1| hypothetical protein (fragment at BAC end); pro... 132 3e-30
pir||T50512 hypothetical protein T22D6.210 - Arabidopsis thalian... 72 4e-12
>ref|NP_197711.2| unknown protein; protein id: At5g23200.1, supported by cDNA:
gi_18491156, supported by cDNA: gi_20258932 [Arabidopsis
thaliana] gi|18491157|gb|AAL69481.1| unknown protein
[Arabidopsis thaliana] gi|20258933|gb|AAM14182.1|
unknown protein [Arabidopsis thaliana]
Length = 399
Score = 178 bits (451), Expect = 4e-44
Identities = 82/129 (63%), Positives = 103/129 (79%), Gaps = 1/129 (0%)
Frame = -2
Query: 507 GDRSELIERRNPLALAHFANHPPKGVQPNVMICPYDYPLTEDNMRVHIPNVLFGDA-EVN 331
G E++ERRNPLA H ANHP K + PNVMICPYD+PL ++R +IPN+ FGD+ E+
Sbjct: 273 GKGKEVLERRNPLAFGHLANHPAKEMTPNVMICPYDFPLMAKDLRPYIPNISFGDSGEIK 332
Query: 330 MRRFGSFWFKSGGSRNSGSHVPTLKSLVLIATRAIQDEELLLNYRLSNTKRRPEWYAPVD 151
M+RFGSFWFK+G +G P LK+LVL+ATR++ +EELLLNYRLSN+KRRP+WY PV+
Sbjct: 333 MKRFGSFWFKTGSK--NGLEAPVLKTLVLVATRSLCNEELLLNYRLSNSKRRPDWYTPVN 390
Query: 150 EEEDRRRWS 124
EEEDRRRWS
Sbjct: 391 EEEDRRRWS 399
>dbj|BAB11175.1| gene_id:MKD15.6~unknown protein [Arabidopsis thaliana]
Length = 437
Score = 178 bits (451), Expect = 4e-44
Identities = 82/129 (63%), Positives = 103/129 (79%), Gaps = 1/129 (0%)
Frame = -2
Query: 507 GDRSELIERRNPLALAHFANHPPKGVQPNVMICPYDYPLTEDNMRVHIPNVLFGDA-EVN 331
G E++ERRNPLA H ANHP K + PNVMICPYD+PL ++R +IPN+ FGD+ E+
Sbjct: 311 GKGKEVLERRNPLAFGHLANHPAKEMTPNVMICPYDFPLMAKDLRPYIPNISFGDSGEIK 370
Query: 330 MRRFGSFWFKSGGSRNSGSHVPTLKSLVLIATRAIQDEELLLNYRLSNTKRRPEWYAPVD 151
M+RFGSFWFK+G +G P LK+LVL+ATR++ +EELLLNYRLSN+KRRP+WY PV+
Sbjct: 371 MKRFGSFWFKTGSK--NGLEAPVLKTLVLVATRSLCNEELLLNYRLSNSKRRPDWYTPVN 428
Query: 150 EEEDRRRWS 124
EEEDRRRWS
Sbjct: 429 EEEDRRRWS 437
>dbj|BAC43608.1| unknown protein [Arabidopsis thaliana]
Length = 386
Score = 132 bits (331), Expect = 3e-30
Identities = 65/121 (53%), Positives = 89/121 (72%), Gaps = 1/121 (0%)
Frame = -2
Query: 507 GDRSELIERRNPLALAHFANHPPKGVQPNVMICPYDYPLTEDNMRVHIPNVLFGD-AEVN 331
G +IE RNPLA HF NHP K ++ NVMICPYD+ L+E MR +IPNV FG+ +V
Sbjct: 268 GGVEAVIEMRNPLAFGHFINHPGKEMESNVMICPYDFLLSETEMRAYIPNVAFGNTGDVK 327
Query: 330 MRRFGSFWFKSGGSRNSGSHVPTLKSLVLIATRAIQDEELLLNYRLSNTKRRPEWYAPVD 151
M RF SF ++G + + +HV LK++VL+AT+A+ +EEL+LNYRLSN+++R EWY P+D
Sbjct: 328 MGRFESFLSRTGSNSSLDAHV--LKTIVLVATKALCNEELMLNYRLSNSEKRLEWYIPLD 385
Query: 150 E 148
E
Sbjct: 386 E 386
>ref|NP_196444.1| hypothetical protein (fragment at BAC end); protein id: At5g08270.1
[Arabidopsis thaliana]
Length = 386
Score = 132 bits (331), Expect = 3e-30
Identities = 65/121 (53%), Positives = 89/121 (72%), Gaps = 1/121 (0%)
Frame = -2
Query: 507 GDRSELIERRNPLALAHFANHPPKGVQPNVMICPYDYPLTEDNMRVHIPNVLFGD-AEVN 331
G +IE RNPLA HF NHP K ++ NVMICPYD+ L+E MR +IPNV FG+ +V
Sbjct: 268 GGVEAVIEMRNPLAFGHFINHPGKEMESNVMICPYDFLLSETEMRAYIPNVAFGNTGDVK 327
Query: 330 MRRFGSFWFKSGGSRNSGSHVPTLKSLVLIATRAIQDEELLLNYRLSNTKRRPEWYAPVD 151
M RF SF ++G + + +HV LK++VL+AT+A+ +EEL+LNYRLSN+++R EWY P+D
Sbjct: 328 MGRFESFLSRTGSNSSLDAHV--LKTIVLVATKALCNEELMLNYRLSNSEKRLEWYIPLD 385
Query: 150 E 148
E
Sbjct: 386 E 386
>pir||T50512 hypothetical protein T22D6.210 - Arabidopsis thaliana (fragment)
gi|8346564|emb|CAB93728.1| hypothetical protein
(fragment at BAC end) [Arabidopsis thaliana]
Length = 325
Score = 72.0 bits (175), Expect = 4e-12
Identities = 32/55 (58%), Positives = 39/55 (70%)
Frame = -2
Query: 507 GDRSELIERRNPLALAHFANHPPKGVQPNVMICPYDYPLTEDNMRVHIPNVLFGD 343
G +IE RNPLA HF NHP K ++ NVMICPYD+ L+E MR +IPNV FG+
Sbjct: 268 GGVEAVIEMRNPLAFGHFINHPGKEMESNVMICPYDFLLSETEMRAYIPNVAFGN 322
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 444,447,093
Number of Sequences: 1393205
Number of extensions: 9499865
Number of successful extensions: 21234
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 20754
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21227
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 15652649358
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
