Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003378A_C01 KMC003378A_c01
(499 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAG38144.1| unknown [Glycine max] 154 5e-37
gb|AAG38145.1| unknown [Glycine max] 154 5e-37
gb|AAG38146.1| unknown [Glycine max] 119 2e-26
ref|NP_201251.1| ZW10-like protein; protein id: At5g64460.1, sup... 118 3e-26
pir||D96616 hypothetical protein F19C14.10 [imported] - Arabidop... 102 2e-21
>gb|AAG38144.1| unknown [Glycine max]
Length = 284
Score = 154 bits (389), Expect = 5e-37
Identities = 69/86 (80%), Positives = 79/86 (91%)
Frame = -3
Query: 497 KEIAVVSHTGFLFHALSAFGNDCHPTVKNEICTHFANCELRSMVIVDRGLIGSDDPSSNY 318
KEIAVV+H+GFLFH+LSAFGNDCHP VKNEICTHFANCELRSMVI+DRG+IGSD+ S+NY
Sbjct: 199 KEIAVVTHSGFLFHSLSAFGNDCHPNVKNEICTHFANCELRSMVIIDRGMIGSDESSTNY 258
Query: 317 PGKIPHGLDLPSDIADEKLVANGPAN 240
PGK+P GLDLPSD+AD+K NG AN
Sbjct: 259 PGKVPDGLDLPSDVADQKHPENGQAN 284
>gb|AAG38145.1| unknown [Glycine max]
Length = 284
Score = 154 bits (389), Expect = 5e-37
Identities = 69/86 (80%), Positives = 79/86 (91%)
Frame = -3
Query: 497 KEIAVVSHTGFLFHALSAFGNDCHPTVKNEICTHFANCELRSMVIVDRGLIGSDDPSSNY 318
KEIAVV+H+GFLFH+LSAFGNDCHP VKNEICTHFANCELRSMVI+DRG+IGSD+ S+NY
Sbjct: 199 KEIAVVTHSGFLFHSLSAFGNDCHPNVKNEICTHFANCELRSMVIIDRGMIGSDESSTNY 258
Query: 317 PGKIPHGLDLPSDIADEKLVANGPAN 240
PGK+P GLDLPSD+AD+K NG AN
Sbjct: 259 PGKVPDGLDLPSDVADQKHPENGQAN 284
>gb|AAG38146.1| unknown [Glycine max]
Length = 313
Score = 119 bits (297), Expect = 2e-26
Identities = 53/72 (73%), Positives = 62/72 (85%)
Frame = -3
Query: 497 KEIAVVSHTGFLFHALSAFGNDCHPTVKNEICTHFANCELRSMVIVDRGLIGSDDPSSNY 318
KE AVV+H GFLFH+L A GNDCHP VKNEICTHFANCELRSMVI+D+G+IGS++ S+NY
Sbjct: 201 KEKAVVTHRGFLFHSLRALGNDCHPNVKNEICTHFANCELRSMVIIDKGVIGSNESSTNY 260
Query: 317 PGKIPHGLDLPS 282
GKIP+G PS
Sbjct: 261 TGKIPYGRPCPS 272
>ref|NP_201251.1| ZW10-like protein; protein id: At5g64460.1, supported by cDNA:
gi_14334941 [Arabidopsis thaliana]
gi|10178227|dbj|BAB11607.1| ZW10-like protein
[Arabidopsis thaliana] gi|24030311|gb|AAN41324.1|
putative ZW10 protein [Arabidopsis thaliana]
Length = 282
Score = 118 bits (296), Expect = 3e-26
Identities = 52/73 (71%), Positives = 62/73 (84%)
Frame = -3
Query: 497 KEIAVVSHTGFLFHALSAFGNDCHPTVKNEICTHFANCELRSMVIVDRGLIGSDDPSSNY 318
KEIA+V+H+GFLFH L+A N+CHP VK EIC HFANCELRSMVIVDR ++GSD ++Y
Sbjct: 199 KEIAIVTHSGFLFHTLNALQNECHPDVKKEICGHFANCELRSMVIVDRSMLGSDSSVTDY 258
Query: 317 PGKIPHGLDLPSD 279
PGKIP G+DLPSD
Sbjct: 259 PGKIPKGIDLPSD 271
>pir||D96616 hypothetical protein F19C14.10 [imported] - Arabidopsis thaliana
gi|8979945|gb|AAF82259.1|AC008051_10 Identical to gene
ZW10 from Arabidopsis thaliana gb|AB028195 and is a
member of the Phosphoglycerate mutase PF|00300 family
Length = 313
Score = 102 bits (254), Expect = 2e-21
Identities = 48/78 (61%), Positives = 59/78 (75%)
Frame = -3
Query: 497 KEIAVVSHTGFLFHALSAFGNDCHPTVKNEICTHFANCELRSMVIVDRGLIGSDDPSSNY 318
KEIAVV+H+GFL+ L++FGNDC P+VKNEI F NCELRS V+VD+ + SD P +NY
Sbjct: 236 KEIAVVTHSGFLYQTLNSFGNDCDPSVKNEISKKFVNCELRSFVLVDKCMSSSDPPMTNY 295
Query: 317 PGKIPHGLDLPSDIADEK 264
PG I G D SDIAD+K
Sbjct: 296 PGTILTGEDASSDIADQK 313
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 430,560,493
Number of Sequences: 1393205
Number of extensions: 8890028
Number of successful extensions: 20553
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 20102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20552
length of database: 448,689,247
effective HSP length: 114
effective length of database: 289,863,877
effective search space used: 14783057727
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
