Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003377A_C01 KMC003377A_c01
(604 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CAB53491.1| CAA303718.1 protein [Oryza sativa] 72 4e-12
ref|NP_175028.1| hypothetical protein; protein id: At1g43630.1 [... 69 6e-11
gb|AAM61006.1| unknown [Arabidopsis thaliana] 68 8e-11
ref|NP_565086.1| expressed protein; protein id: At1g74450.1, sup... 68 8e-11
ref|NP_564062.1| expressed protein; protein id: At1g18740.1, sup... 62 6e-09
>emb|CAB53491.1| CAA303718.1 protein [Oryza sativa]
Length = 425
Score = 72.4 bits (176), Expect = 4e-12
Identities = 34/49 (69%), Positives = 41/49 (83%)
Frame = -2
Query: 588 RKRXQEXSQVCDALKDGLDPLERQVREVFHRIVRSRTEGLDSLGRPNNA 442
++ QE QVC +LKDGLDPLERQVRE+FHR+VR+RTE LD L RP+NA
Sbjct: 376 QEATQELVQVCGSLKDGLDPLERQVREMFHRVVRTRTEILDYLSRPHNA 424
>ref|NP_175028.1| hypothetical protein; protein id: At1g43630.1 [Arabidopsis
thaliana] gi|25354337|pir||E96499 hypothetical protein
T10P12.8 [imported] - Arabidopsis thaliana
gi|5080766|gb|AAD39276.1|AC007203_8 Hypothetical protein
[Arabidopsis thaliana]
Length = 383
Score = 68.6 bits (166), Expect = 6e-11
Identities = 30/50 (60%), Positives = 41/50 (82%)
Frame = -2
Query: 588 RKRXQEXSQVCDALKDGLDPLERQVREVFHRIVRSRTEGLDSLGRPNNAE 439
++R QE VC+A+K+GLDP +R+VR+VFH+IVR+RTE LDSLG+ N E
Sbjct: 334 KERVQELMNVCEAIKEGLDPFDRKVRDVFHQIVRTRTEALDSLGKLQNQE 383
>gb|AAM61006.1| unknown [Arabidopsis thaliana]
Length = 397
Score = 68.2 bits (165), Expect = 8e-11
Identities = 31/50 (62%), Positives = 43/50 (86%)
Frame = -2
Query: 588 RKRXQEXSQVCDALKDGLDPLERQVREVFHRIVRSRTEGLDSLGRPNNAE 439
R+R +E ++ +ALK+GLDP ER+VREVFHRIVRSRTEGLD++G+ + +E
Sbjct: 348 RERVEELGKLQEALKNGLDPFERKVREVFHRIVRSRTEGLDTVGKHHGSE 397
>ref|NP_565086.1| expressed protein; protein id: At1g74450.1, supported by cDNA:
108193., supported by cDNA: gi_16226873, supported by
cDNA: gi_18176415 [Arabidopsis thaliana]
gi|25354336|pir||D96773 unknown protein F1M20.13
[imported] - Arabidopsis thaliana
gi|12324802|gb|AAG52364.1|AC011765_16 unknown protein;
39057-40250 [Arabidopsis thaliana]
gi|16226874|gb|AAL16287.1|AF428357_1 At1g74450/F1M20_13
[Arabidopsis thaliana] gi|18176416|gb|AAL60040.1|
unknown protein [Arabidopsis thaliana]
gi|22136856|gb|AAM91772.1| unknown protein [Arabidopsis
thaliana]
Length = 397
Score = 68.2 bits (165), Expect = 8e-11
Identities = 31/50 (62%), Positives = 43/50 (86%)
Frame = -2
Query: 588 RKRXQEXSQVCDALKDGLDPLERQVREVFHRIVRSRTEGLDSLGRPNNAE 439
R+R +E ++ +ALK+GLDP ER+VREVFHRIVRSRTEGLD++G+ + +E
Sbjct: 348 RERVEELGKLQEALKNGLDPFERKVREVFHRIVRSRTEGLDTVGKHHGSE 397
>ref|NP_564062.1| expressed protein; protein id: At1g18740.1, supported by cDNA:
40753., supported by cDNA: gi_14517471 [Arabidopsis
thaliana] gi|25354338|pir||C86321 hypothetical protein
F6A14.15 - Arabidopsis thaliana
gi|6730709|gb|AAF27104.1|AC011809_13 Unknown protein
[Arabidopsis thaliana] gi|14517472|gb|AAK62626.1|
At1g18740/F6A14_15 [Arabidopsis thaliana]
gi|22136562|gb|AAM91067.1| At1g18740/F6A14_15
[Arabidopsis thaliana]
Length = 382
Score = 62.0 bits (149), Expect = 6e-09
Identities = 30/43 (69%), Positives = 36/43 (82%)
Frame = -2
Query: 588 RKRXQEXSQVCDALKDGLDPLERQVREVFHRIVRSRTEGLDSL 460
++R E QV +AL++GLDP ER+VREVFHRIVRSRTE LDSL
Sbjct: 340 KQRVDELVQVREALRNGLDPFERKVREVFHRIVRSRTESLDSL 382
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 498,161,575
Number of Sequences: 1393205
Number of extensions: 10331720
Number of successful extensions: 34523
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 33390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 34514
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 23711793746
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
