Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003376A_C01 KMC003376A_c01
(525 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_201563.1| unknown protein; protein id: At5g67620.1 [Arabi... 33 0.002
gb|AAG37414.1| ACP36DE [Drosophila simulans] 32 4.5
pir||JC2131 metabotropic glutamate receptor 5 B - human 32 5.9
sp|P41594|MGR5_HUMAN Metabotropic glutamate receptor 5 precursor... 32 5.9
sp|P31424|MGR5_RAT Metabotropic glutamate receptor 5 precursor (... 32 5.9
>ref|NP_201563.1| unknown protein; protein id: At5g67620.1 [Arabidopsis thaliana]
gi|9757883|dbj|BAB08470.1| gene_id:K9I9.19~unknown
protein [Arabidopsis thaliana]
Length = 182
Score = 33.5 bits (75), Expect(2) = 0.002
Identities = 22/53 (41%), Positives = 31/53 (57%)
Frame = -2
Query: 521 VLKEFASKKSGKLGKLLKERGTHGVHLKHKDSRATSSDTPIKVEQDIQRMGNN 363
VL EFA+KK KLGKLLKE G G+ L K ++ K++Q+ ++ N
Sbjct: 86 VLNEFATKKCVKLGKLLKEGG--GLDLTKKKTKHRKK----KLDQETGKVNPN 132
Score = 28.9 bits (63), Expect(2) = 0.002
Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 3/36 (8%)
Frame = -3
Query: 364 MAASSNNKGVGRHFNGGS---GHWRPALQSIAEIGT 266
+A + G R +GG G WRPAL SI E G+
Sbjct: 146 VAGENGGDGFMRRSHGGGRGGGGWRPALHSIPEFGS 181
>gb|AAG37414.1| ACP36DE [Drosophila simulans]
Length = 770
Score = 32.0 bits (71), Expect = 4.5
Identities = 20/46 (43%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Frame = -2
Query: 485 LGKLLKER-GTHGVHLKHKDSRATSSDTPIKVEQDIQRMGNNGSQQ 351
LG+ KE+ ++ K S A+SS T K++QDIQ G+ GSQQ
Sbjct: 615 LGQQQKEQQAQESINNKQSSSGASSSQT--KLQQDIQSAGSQGSQQ 658
>pir||JC2131 metabotropic glutamate receptor 5 B - human
Length = 1212
Score = 31.6 bits (70), Expect = 5.9
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 506 ASKKSGKLGKLLKERGTHGVHLKHKDSRATSSDTPIKVEQDIQRMGNNGSQQQ*QRCRKA 327
A+ +S L L K RG+ G L++KD R + I+ MGN G K+
Sbjct: 855 AASRSSSLVNLWKRRGSSGETLRYKDRRLAQHKSEIECFTPKGSMGNGGRATMSSSNGKS 914
Query: 326 FQW 318
W
Sbjct: 915 VTW 917
>sp|P41594|MGR5_HUMAN Metabotropic glutamate receptor 5 precursor (mGluR5)
gi|1408054|dbj|BAA05892.1| Metabotropic Glutamate
Receptor Subtype 5b (mGluR5b) [Homo sapiens]
Length = 1212
Score = 31.6 bits (70), Expect = 5.9
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 506 ASKKSGKLGKLLKERGTHGVHLKHKDSRATSSDTPIKVEQDIQRMGNNGSQQQ*QRCRKA 327
A+ +S L L K RG+ G L++KD R + I+ MGN G K+
Sbjct: 855 AASRSSSLVNLWKRRGSSGETLRYKDRRLAQHKSEIECFTPKGSMGNGGRATMSSSNGKS 914
Query: 326 FQW 318
W
Sbjct: 915 VTW 917
>sp|P31424|MGR5_RAT Metabotropic glutamate receptor 5 precursor (mGluR5)
Length = 1203
Score = 31.6 bits (70), Expect = 5.9
Identities = 19/63 (30%), Positives = 27/63 (42%)
Frame = -2
Query: 506 ASKKSGKLGKLLKERGTHGVHLKHKDSRATSSDTPIKVEQDIQRMGNNGSQQQ*QRCRKA 327
A+ +S L L K RG+ G L++KD R + I+ MGN G K+
Sbjct: 854 AASRSSSLVNLWKRRGSSGETLRYKDRRLAQHKSEIECFTPKGSMGNGGRATMSSSNGKS 913
Query: 326 FQW 318
W
Sbjct: 914 VTW 916
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 450,933,050
Number of Sequences: 1393205
Number of extensions: 9934461
Number of successful extensions: 23596
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22898
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23573
length of database: 448,689,247
effective HSP length: 115
effective length of database: 288,470,672
effective search space used: 17019769648
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
