Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003371A_C01 KMC003371A_c01
(400 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
dbj|BAC29653.1| unnamed protein product [Mus musculus] 33 1.1
ref|NP_700469.1| RIKEN cDNA C130099A20; hypothetical protein MGC... 33 1.1
ref|XP_236554.1| similar to hypothetical protein MGC38214 [Mus m... 33 1.1
pir||T01391 WD-repeat protein T4I9.10 - Arabidopsis thaliana gi|... 31 4.2
ref|NP_192211.2| putative WD-repeat protein; protein id: At4g030... 31 4.2
>dbj|BAC29653.1| unnamed protein product [Mus musculus]
Length = 480
Score = 32.7 bits (73), Expect = 1.1
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 80 FTTRETAQIIDALVQHNILIYYRYSLQGINPILN 181
F +T QI D +H L+Y+ YSL G +PILN
Sbjct: 321 FKVIKTHQIEDERERHEKLLYFGYSLLGAHPILN 354
>ref|NP_700469.1| RIKEN cDNA C130099A20; hypothetical protein MGC38214 [Mus musculus]
gi|23272271|gb|AAH23960.1| Similar to hypothetical
protein FLJ23751 [Mus musculus]
gi|23274070|gb|AAH36342.1| Similar to hypothetical
protein FLJ23751 [Mus musculus]
gi|26335887|dbj|BAC31644.1| unnamed protein product [Mus
musculus] gi|26349521|dbj|BAC38400.1| unnamed protein
product [Mus musculus] gi|26350729|dbj|BAC39001.1|
unnamed protein product [Mus musculus]
gi|26351181|dbj|BAC39227.1| unnamed protein product [Mus
musculus]
Length = 480
Score = 32.7 bits (73), Expect = 1.1
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 80 FTTRETAQIIDALVQHNILIYYRYSLQGINPILN 181
F +T QI D +H L+Y+ YSL G +PILN
Sbjct: 321 FKVIKTHQIEDERERHEKLLYFGYSLLGAHPILN 354
>ref|XP_236554.1| similar to hypothetical protein MGC38214 [Mus musculus] [Rattus
norvegicus]
Length = 480
Score = 32.7 bits (73), Expect = 1.1
Identities = 16/34 (47%), Positives = 21/34 (61%)
Frame = +2
Query: 80 FTTRETAQIIDALVQHNILIYYRYSLQGINPILN 181
F +T QI D +H L+Y+ YSL G +PILN
Sbjct: 321 FKVIKTHQIEDERERHEKLLYFGYSLLGAHPILN 354
>pir||T01391 WD-repeat protein T4I9.10 - Arabidopsis thaliana
gi|3924603|gb|AAC79104.1| putative WD-repeat protein
[Arabidopsis thaliana] gi|7269787|emb|CAB77787.1|
putative WD-repeat protein [Arabidopsis thaliana]
Length = 555
Score = 30.8 bits (68), Expect = 4.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 398 WEFAGSSDRAASTKKRAWNRHFY 330
WEF GS + +KKR RHFY
Sbjct: 532 WEFPGSGEAPIMSKKRVRRRHFY 554
>ref|NP_192211.2| putative WD-repeat protein; protein id: At4g03020.1, supported by
cDNA: gi_20466537 [Arabidopsis thaliana]
gi|20466538|gb|AAM20586.1| putative WD-repeat protein
[Arabidopsis thaliana] gi|23198298|gb|AAN15676.1|
putative WD-repeat protein [Arabidopsis thaliana]
Length = 493
Score = 30.8 bits (68), Expect = 4.2
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 398 WEFAGSSDRAASTKKRAWNRHFY 330
WEF GS + +KKR RHFY
Sbjct: 470 WEFPGSGEAPIMSKKRVRRRHFY 492
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 318,184,199
Number of Sequences: 1393205
Number of extensions: 6004772
Number of successful extensions: 11116
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 10926
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11115
length of database: 448,689,247
effective HSP length: 108
effective length of database: 298,223,107
effective search space used: 7157354568
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
