Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003370A_C01 KMC003370A_c01
(584 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM65994.1| unknown [Arabidopsis thaliana] 111 6e-24
dbj|BAC43550.1| unknown protein [Arabidopsis thaliana] 111 8e-24
ref|NP_566746.1| Expressed protein; protein id: At3g24315.1, sup... 111 8e-24
dbj|BAB02931.1| gene_id:K7M2.8~ref|NP_001196.1~similar to unknow... 111 8e-24
ref|XP_128520.2| BCL2/adenovirus E1B 19 kDa-interacting protein ... 36 0.31
>gb|AAM65994.1| unknown [Arabidopsis thaliana]
Length = 293
Score = 111 bits (278), Expect = 6e-24
Identities = 67/112 (59%), Positives = 79/112 (69%), Gaps = 2/112 (1%)
Frame = -1
Query: 584 KAESEYKGHRSFLMRTRNLLSTMPRPDVIDRLIIGLGFLLFSLAVLYVVSKRIGLLTLPR 405
KAESEYKGHRS L RTRNLLSTM R DVIDR+I+ +GF LF AV+YVVSKRIG+L L R
Sbjct: 185 KAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGILKLQR 244
Query: 404 KVTEAIKAGVVGQADLRPQPLADD-MNLHQVRDDH-VHNTEAPLEQRIHDEL 255
T AIKA + G+A + + DD M L Q D + V PL+QR+HDEL
Sbjct: 245 MATAAIKAQLAGKA---AKGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 293
>dbj|BAC43550.1| unknown protein [Arabidopsis thaliana]
Length = 293
Score = 111 bits (277), Expect = 8e-24
Identities = 67/112 (59%), Positives = 78/112 (68%), Gaps = 2/112 (1%)
Frame = -1
Query: 584 KAESEYKGHRSFLMRTRNLLSTMPRPDVIDRLIIGLGFLLFSLAVLYVVSKRIGLLTLPR 405
KAESEYKGHRS L RTRNLLSTM R DVIDR+I+ +GF LF AV+YVVSKRIG+L L R
Sbjct: 185 KAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGILKLQR 244
Query: 404 KVTEAIKAGVVGQADLRPQPLADD-MNLHQVRDDH-VHNTEAPLEQRIHDEL 255
T AIKA + G+A + DD M L Q D + V PL+QR+HDEL
Sbjct: 245 MATAAIKAQLAGKA---ANGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 293
>ref|NP_566746.1| Expressed protein; protein id: At3g24315.1, supported by cDNA:
6801. [Arabidopsis thaliana]
Length = 293
Score = 111 bits (277), Expect = 8e-24
Identities = 67/112 (59%), Positives = 78/112 (68%), Gaps = 2/112 (1%)
Frame = -1
Query: 584 KAESEYKGHRSFLMRTRNLLSTMPRPDVIDRLIIGLGFLLFSLAVLYVVSKRIGLLTLPR 405
KAESEYKGHRS L RTRNLLSTM R DVIDR+I+ +GF LF AV+YVVSKRIG+L L R
Sbjct: 185 KAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGILKLQR 244
Query: 404 KVTEAIKAGVVGQADLRPQPLADD-MNLHQVRDDH-VHNTEAPLEQRIHDEL 255
T AIKA + G+A + DD M L Q D + V PL+QR+HDEL
Sbjct: 245 MATAAIKAQLAGKA---ANGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 293
>dbj|BAB02931.1| gene_id:K7M2.8~ref|NP_001196.1~similar to unknown protein
[Arabidopsis thaliana]
Length = 330
Score = 111 bits (277), Expect = 8e-24
Identities = 67/112 (59%), Positives = 78/112 (68%), Gaps = 2/112 (1%)
Frame = -1
Query: 584 KAESEYKGHRSFLMRTRNLLSTMPRPDVIDRLIIGLGFLLFSLAVLYVVSKRIGLLTLPR 405
KAESEYKGHRS L RTRNLLSTM R DVIDR+I+ +GF LF AV+YVVSKRIG+L L R
Sbjct: 222 KAESEYKGHRSLLSRTRNLLSTMQRQDVIDRIILIVGFSLFVFAVVYVVSKRIGILKLQR 281
Query: 404 KVTEAIKAGVVGQADLRPQPLADD-MNLHQVRDDH-VHNTEAPLEQRIHDEL 255
T AIKA + G+A + DD M L Q D + V PL+QR+HDEL
Sbjct: 282 MATAAIKAQLAGKA---ANGVGDDVMPLGQQFDGNTVPTVNIPLQQRMHDEL 330
>ref|XP_128520.2| BCL2/adenovirus E1B 19 kDa-interacting protein 1, NIP1 [Mus
musculus]
Length = 228
Score = 36.2 bits (82), Expect = 0.31
Identities = 18/52 (34%), Positives = 28/52 (53%)
Frame = -1
Query: 581 AESEYKGHRSFLMRTRNLLSTMPRPDVIDRLIIGLGFLLFSLAVLYVVSKRI 426
A E+K + R L++ R ++ D+L+I L LF VLY+V KR+
Sbjct: 173 ANEEFKSMSGTIQLGRKLITKYNRRELTDKLLIFLALALFLATVLYIVKKRL 224
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 464,502,487
Number of Sequences: 1393205
Number of extensions: 9553039
Number of successful extensions: 19407
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 18729
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 19402
length of database: 448,689,247
effective HSP length: 117
effective length of database: 285,684,262
effective search space used: 21997688174
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
