Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003368A_C01 KMC003368A_c01
(481 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_071772.1| hypothetical protein XP_071772 [Homo sapiens] 33 2.1
ref|NP_221121.1| unknown [Rickettsia prowazekii] gi|7467850|pir|... 32 4.7
gb|AAK19748.1|AF348207_1 C2H2 zinc finger protein [Homo sapiens] 31 6.1
ref|NP_057520.2| chromosome 20 open reading frame 104; hepatocel... 31 6.1
dbj|BAB40050.1| P0445D12.24 [Oryza sativa (japonica cultivar-gro... 31 6.1
>ref|XP_071772.1| hypothetical protein XP_071772 [Homo sapiens]
Length = 122
Score = 32.7 bits (73), Expect = 2.1
Identities = 19/70 (27%), Positives = 34/70 (48%)
Frame = +3
Query: 270 MKPKKPCYCHSVPK*PLTNQFRDPSAPASMNLVFASTTYVIFNSSSLVFSLVTVWQTSLS 449
+ P +CH P+ T Q ++ F+ +++F+ S L FSL+ + + L
Sbjct: 6 LNPPVVVFCHGGPRRQYTTQ-------RNILSTFSLFHFIVFSPSFLSFSLLLSFSSLLF 58
Query: 450 PALGVFNYNF 479
P + FN+NF
Sbjct: 59 PLVFNFNFNF 68
>ref|NP_221121.1| unknown [Rickettsia prowazekii] gi|7467850|pir||E71637 hypothetical
protein RP769 - Rickettsia prowazekii
gi|3861298|emb|CAA15197.1| unknown [Rickettsia
prowazekii]
Length = 362
Score = 31.6 bits (70), Expect = 4.7
Identities = 15/39 (38%), Positives = 23/39 (58%)
Frame = -1
Query: 220 SIMNPVVTISLCGFCFILGELSLKCIFFCLYSGSSFLFF 104
+I+NP+ TI L + + +L+ K + CL S S LFF
Sbjct: 119 TILNPISTIGLQKYSLLEAKLTKKALSECLISESGLLFF 157
>gb|AAK19748.1|AF348207_1 C2H2 zinc finger protein [Homo sapiens]
Length = 639
Score = 31.2 bits (69), Expect = 6.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 69 RMYSFNCGFMYGKNKKLDPEYKQKKMHFKLNSPRMKQKPQSEIVT 203
++ ++ + +G K L+PE K H + P KP E +T
Sbjct: 467 KLLHYHMKYFHGMEKSLEPEESPGKRHVQTRGPSASDKPSQETLT 511
>ref|NP_057520.2| chromosome 20 open reading frame 104; hepatocellular
carcinoma-associated antigen 58; C2H2 zinc finger
protein; transcription factor TZP; glioma-expressed
antigen 2 [Homo sapiens] gi|13195151|gb|AAK13046.1|
transcription factor TZP [Homo sapiens]
Length = 1012
Score = 31.2 bits (69), Expect = 6.1
Identities = 12/45 (26%), Positives = 21/45 (46%)
Frame = +3
Query: 69 RMYSFNCGFMYGKNKKLDPEYKQKKMHFKLNSPRMKQKPQSEIVT 203
++ ++ + +G K L+PE K H + P KP E +T
Sbjct: 467 KLLHYHMKYFHGMEKSLEPEESPGKRHVQTRGPSASDKPSQETLT 511
>dbj|BAB40050.1| P0445D12.24 [Oryza sativa (japonica cultivar-group)]
gi|14090363|dbj|BAB55521.1| P0037C04.8 [Oryza sativa
(japonica cultivar-group)]
Length = 283
Score = 31.2 bits (69), Expect = 6.1
Identities = 13/32 (40%), Positives = 17/32 (52%)
Frame = +2
Query: 302 CTKITADKSISGSQCTCLHEPCVCINDICDIQ 397
CT+I A + +C H PCVC D C+ Q
Sbjct: 113 CTEIVAYTERRNHEASCPHAPCVCPFDGCNYQ 144
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 406,595,123
Number of Sequences: 1393205
Number of extensions: 8543295
Number of successful extensions: 21154
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 20575
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21133
length of database: 448,689,247
effective HSP length: 113
effective length of database: 291,257,082
effective search space used: 13397825772
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
