Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003365A_C01 KMC003365A_c01
(553 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|NP_566197.1| expansin, putative; protein id: At3g03220.1, su... 119 3e-26
gb|AAF26104.1|AC012328_7 putative expansin precursor [Arabidopsi... 119 3e-26
gb|AAM67333.1| Alpha-expansin 13 precursor (At-EXP13) (AtEx13) (... 118 4e-26
gb|AAD13631.1| expansin precursor [Lycopersicon esculentum] 115 3e-25
emb|CAC19184.1| expansin [Cicer arietinum] 103 2e-21
>ref|NP_566197.1| expansin, putative; protein id: At3g03220.1, supported by cDNA:
37211., supported by cDNA: gi_16604574, supported by
cDNA: gi_21281242 [Arabidopsis thaliana]
gi|20138030|sp|Q9M9P0|EX13_ARATH Alpha-expansin 13
precursor (At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22)
gi|16604575|gb|AAL24089.1| putative expansin precursor
protein [Arabidopsis thaliana]
gi|21281243|gb|AAM45038.1| putative expansin precursor
protein [Arabidopsis thaliana]
Length = 266
Score = 119 bits (297), Expect = 3e-26
Identities = 52/65 (80%), Positives = 58/65 (89%)
Frame = -1
Query: 553 VKGSRTGWLQMGRNWGQNWHINALLQNQPLSFEVTGSDGKTVTSYNAAPKDWSFGQTFEG 374
+KGSRTGWL MGRNWGQNWHINA L+NQ LSFEVT SD TVTSYN +PK+W++GQTFEG
Sbjct: 201 IKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEG 260
Query: 373 KQFET 359
KQFET
Sbjct: 261 KQFET 265
>gb|AAF26104.1|AC012328_7 putative expansin precursor [Arabidopsis thaliana]
Length = 295
Score = 119 bits (297), Expect = 3e-26
Identities = 52/65 (80%), Positives = 58/65 (89%)
Frame = -1
Query: 553 VKGSRTGWLQMGRNWGQNWHINALLQNQPLSFEVTGSDGKTVTSYNAAPKDWSFGQTFEG 374
+KGSRTGWL MGRNWGQNWHINA L+NQ LSFEVT SD TVTSYN +PK+W++GQTFEG
Sbjct: 230 IKGSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEG 289
Query: 373 KQFET 359
KQFET
Sbjct: 290 KQFET 294
>gb|AAM67333.1| Alpha-expansin 13 precursor (At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22)
[Arabidopsis thaliana]
Length = 266
Score = 118 bits (296), Expect = 4e-26
Identities = 52/65 (80%), Positives = 57/65 (87%)
Frame = -1
Query: 553 VKGSRTGWLQMGRNWGQNWHINALLQNQPLSFEVTGSDGKTVTSYNAAPKDWSFGQTFEG 374
+KGSRTGWL MGRNWGQNWHINA L NQ LSFEVT SD TVTSYN +PK+W++GQTFEG
Sbjct: 201 IKGSRTGWLPMGRNWGQNWHINADLSNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEG 260
Query: 373 KQFET 359
KQFET
Sbjct: 261 KQFET 265
>gb|AAD13631.1| expansin precursor [Lycopersicon esculentum]
Length = 267
Score = 115 bits (289), Expect = 3e-25
Identities = 51/65 (78%), Positives = 58/65 (88%)
Frame = -1
Query: 553 VKGSRTGWLQMGRNWGQNWHINALLQNQPLSFEVTGSDGKTVTSYNAAPKDWSFGQTFEG 374
VKGSRTGWL MGR WGQNWHI+A L+NQPLSFE+T SDG T+TSYN APK W+FGQTF+G
Sbjct: 203 VKGSRTGWLPMGRIWGQNWHISADLKNQPLSFEITSSDGVTLTSYNVAPKIWNFGQTFQG 262
Query: 373 KQFET 359
KQFE+
Sbjct: 263 KQFES 267
>emb|CAC19184.1| expansin [Cicer arietinum]
Length = 260
Score = 103 bits (256), Expect = 2e-21
Identities = 43/63 (68%), Positives = 50/63 (79%)
Frame = -1
Query: 553 VKGSRTGWLQMGRNWGQNWHINALLQNQPLSFEVTGSDGKTVTSYNAAPKDWSFGQTFEG 374
+KGSRTGW M RNWGQNW N+ L QPLSF+VT SDG+T+TSYN AP +W FGQTF+G
Sbjct: 198 IKGSRTGWQSMSRNWGQNWQSNSYLNGQPLSFQVTTSDGRTMTSYNVAPSNWQFGQTFQG 257
Query: 373 KQF 365
QF
Sbjct: 258 AQF 260
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 484,712,879
Number of Sequences: 1393205
Number of extensions: 10425996
Number of successful extensions: 31590
Number of sequences better than 10.0: 250
Number of HSP's better than 10.0 without gapping: 30807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 31567
length of database: 448,689,247
effective HSP length: 116
effective length of database: 287,077,467
effective search space used: 19234190289
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
