Nr search
BLASTX 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= KMC003359A_C01 KMC003359A_c01
(376 letters)
Database: nr
1,393,205 sequences; 448,689,247 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gb|AAM93469.1| hypothetical protein [Oryza sativa (japonica cult... 35 0.23
ref|NP_813392.1| outer membrane protein [Bacteroides thetaiotaom... 33 1.2
ref|NP_810414.1| major outer membrane protein OmpA [Bacteroides ... 32 2.0
ref|NP_596443.1| hypothetical protien [Schizosaccharomyces pombe... 31 3.4
gb|EAA21533.1| hypothetical protein [Plasmodium yoelii yoelii] 31 4.4
>gb|AAM93469.1| hypothetical protein [Oryza sativa (japonica cultivar-group)]
Length = 729
Score = 35.0 bits (79), Expect = 0.23
Identities = 18/36 (50%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
Frame = -3
Query: 368 LLRY*-RIWILSCGNFHMLKSCISFSLHKVKPFELL 264
LL+Y RIW L CGN ++S IS K P+ELL
Sbjct: 147 LLKYGERIWALKCGNISSIRSSISTRKFKTDPYELL 182
>ref|NP_813392.1| outer membrane protein [Bacteroides thetaiotaomicron VPI-5482]
gi|29341800|gb|AAO79586.1| outer membrane protein
[Bacteroides thetaiotaomicron VPI-5482]
Length = 363
Score = 32.7 bits (73), Expect = 1.2
Identities = 22/73 (30%), Positives = 35/73 (47%)
Frame = -3
Query: 224 NPQLNMSPACGNA*PISSMSLDADNFVRPSWTWQFEDIQGNVRIFHCNNSYIILNYNPRN 45
N +PA G +S A +V PS T+Q++ +QGN+ I + S + +NP+
Sbjct: 66 NVGYKFAPAFGARLGVSGWQAKA-GWVTPSQTYQYKYLQGNLDIM-ADLSTLFCGFNPKR 123
Query: 44 MFYFYFCLSANFN 6
+F Y A N
Sbjct: 124 VFNAYIFGGAGLN 136
>ref|NP_810414.1| major outer membrane protein OmpA [Bacteroides thetaiotaomicron
VPI-5482] gi|29338809|gb|AAO76608.1| major outer
membrane protein OmpA [Bacteroides thetaiotaomicron
VPI-5482]
Length = 363
Score = 32.0 bits (71), Expect = 2.0
Identities = 16/48 (33%), Positives = 26/48 (53%)
Frame = -3
Query: 149 FVRPSWTWQFEDIQGNVRIFHCNNSYIILNYNPRNMFYFYFCLSANFN 6
+V P T+Q++ +QGNV I + S + +NP+ +F Y A N
Sbjct: 90 WVNPQQTYQYKYLQGNVDIM-ADLSTLFCGFNPKRVFNGYLFAGAGLN 136
>ref|NP_596443.1| hypothetical protien [Schizosaccharomyces pombe]
gi|7490735|pir||T40153 hypothetical protein - fission
yeast (Schizosaccharomyces pombe)
gi|2956781|emb|CAA17894.1| hypothetical protein;
sequence orphan [Schizosaccharomyces pombe]
Length = 533
Score = 31.2 bits (69), Expect = 3.4
Identities = 18/61 (29%), Positives = 33/61 (53%), Gaps = 2/61 (3%)
Frame = +2
Query: 17 HLNKSKS--KTCSLDYNSE*YKNYYNEKSLHSPEYLQIARSMKV*QNCLHLMTLMK*VKH 190
H N ++ K S D N++ + N Y+E SL +PE+ + +K + +L +L + + H
Sbjct: 158 HFNSLEANLKAISKDSNNKAHNNRYDESSLTNPEFSILVERLKSIEE--NLQSLQERISH 215
Query: 191 C 193
C
Sbjct: 216 C 216
>gb|EAA21533.1| hypothetical protein [Plasmodium yoelii yoelii]
Length = 307
Score = 30.8 bits (68), Expect = 4.4
Identities = 15/25 (60%), Positives = 17/25 (68%)
Frame = +2
Query: 20 LNKSKSKTCSLDYNSE*YKNYYNEK 94
L K K KTC L YN+E Y NYY +K
Sbjct: 49 LEKIKDKTCLL-YNNEFYDNYYKKK 72
Database: nr
Posted date: Apr 1, 2003 2:05 AM
Number of letters in database: 448,689,247
Number of sequences in database: 1,393,205
Lambda K H
0.318 0.135 0.401
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 297,811,419
Number of Sequences: 1393205
Number of extensions: 5632285
Number of successful extensions: 13123
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 12832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13122
length of database: 448,689,247
effective HSP length: 100
effective length of database: 309,368,747
effective search space used: 7424849928
frameshift window, decay const: 50, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
